Myroides sp. JBRI-B21084: P3875_01845
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Entry
P3875_01845 CDS
T09249
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mcla
Myroides sp. JBRI-B21084
Pathway
mcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3875_01845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcla03019
]
P3875_01845
Enzymes [BR:
mcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P3875_01845
Messenger RNA biogenesis [BR:
mcla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P3875_01845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
P-loop_SecA
HEM4
Flavi_DEAD
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
WKW46840
LinkDB
All DBs
Position
complement(359772..361049)
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AA seq
425 aa
AA seq
DB search
MNFTEFPLNNNVAEAINDLGYTIATPIQEKAIPVLIDGKDLVGCAQTGTGKTAAFAIPII
NHIHRIVGSGKKRKQIRTIVLAPTRELAIQIAENFEALSKYTQIKTYVIYGGVNMQPQIN
ALKEGVDVLVATPGRFLDLYKQNFIKTDAMHQLVIDEADLMLDMGFINDVRKIIKLTPEN
RQTLMFSATMPMGVRELADEFLSNAIYVAVNDSASTAQNISQKVYLVEKEDKKKLLKHVI
ENLQLKNVLLFTRTKQGADNVVEFLQKEGYKADAIHGDKSQSTRLKILDDFKNKQIDILV
ATDVASRGIDIQQLPFVINYDIPNIPEIYVHRIGRTGRAGETGLALSFVGRDEKTYWQEI
EKLIRLQVKTVKDNPYPWREPNPNAKKDFRTKKTGVNTTTTKKKNTSNSKSRKSDTSKKN
KKRWY
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaattttacagaatttccattaaataacaatgttgccgaagctataaacgatttagga
tatacaattgcaacacccattcaagaaaaagcaattccggttttaattgatggaaaagat
ttagtgggttgtgcccaaacaggtactggtaaaacggcagcttttgctatacctataatt
aaccacattcatagaatagtgggatcgggcaaaaaacgcaaacaaatacgcaccattgtt
ttagcacctactagagaattagccatacaaattgccgaaaattttgaagccctaagcaaa
tacacccaaataaaaacatatgtaatttatggcggcgtaaatatgcaaccacaaattaat
gctttaaaagaaggggttgatgttttagtggctacacctggtaggtttttagatttatac
aaacaaaattttattaaaaccgatgcgatgcatcaattagtaattgatgaagccgatttg
atgcttgatatgggttttattaacgatgttcgtaaaattattaaacttacacctgaaaac
cgacaaacattaatgttttctgccaccatgccaatgggggtgcgtgaacttgccgatgaa
tttttaagcaatgccatttatgttgctgttaatgattctgctagcacggctcaaaacatt
tctcaaaaagtatatttggttgaaaaagaagacaaaaagaaacttttgaaacatgtaatt
gaaaatttacagttaaaaaatgttttattgtttacacgtaccaaacaaggcgccgataat
gtagttgaatttttacaaaaagaaggttataaagccgatgctattcacggtgataaatcg
caaagtacccgtttaaaaattttagacgattttaaaaacaaacaaattgatattttagtt
gctacagatgtggcttcgcgcggaattgatatacaacaattaccttttgtaattaattac
gatataccaaatattcctgaaatttatgtccaccgtattggaagaacgggacgtgcgggt
gaaactggtttggcattgtcatttgttgggcgtgatgaaaaaacatactggcaagaaatt
gaaaaattaattcgtttacaagtaaaaacagtaaaagacaatccctatccttggcgcgaa
ccaaacccaaatgcaaaaaaagattttagaactaaaaaaacaggggtaaatacaactacc
acaaagaaaaaaaatacatcaaactcaaaatcaagaaaatctgatacttcaaaaaagaat
aaaaagagatggtactaa
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