Myroides sp. JBRI-B21084: P3875_03275
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Entry
P3875_03275 CDS
T09249
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mcla
Myroides sp. JBRI-B21084
Pathway
mcla03030
DNA replication
mcla03430
Mismatch repair
mcla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P3875_03275 (dnaE)
03430 Mismatch repair
P3875_03275 (dnaE)
03440 Homologous recombination
P3875_03275 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcla03032
]
P3875_03275 (dnaE)
03400 DNA repair and recombination proteins [BR:
mcla03400
]
P3875_03275 (dnaE)
Enzymes [BR:
mcla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P3875_03275 (dnaE)
DNA replication proteins [BR:
mcla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P3875_03275 (dnaE)
DNA repair and recombination proteins [BR:
mcla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P3875_03275 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
MCM10_OB
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
WKW47096
LinkDB
All DBs
Position
665937..670463
Genome browser
AA seq
1508 aa
AA seq
DB search
MYIIFDTETTGLPKNWNAPITDVDNWPRCIQIAWQLHDGMGNVIECDDYLIKPNGFDIPY
DSERIHGISTLLATQKGVDLNVVLHKFNTALAKANFVVGQNVGFDLNIMGAEFHRAEIPT
NLNKMHVLDTCTEVTAELLKLPGGRGGKFKLPTLTELHQYLFGEPFGEAHNATADVEATT
RCFFELIRKNVFTESELKQPAGYLQQFKEVNPNPFKLIGLQHINLKQASEDIRLQLEASG
VIKGAEKQKISTEVKAAFQEAVFAHLHNHTQFSVLQSTIDIGAMIKKTASENMSAIAMTD
HGNMMGAFKFVSAILDHNKTVKKANEAAIENGEEPILSEIKPIVGCEFFVCENLTDKSKK
DNGYQIVLLAKNKKGYHNLAKLASIASIEGFYYVPRIDKQALLKYKDDIIVLSGNLYGEV
PNKILNLGEKQAEEALLWWKEHFKEDFYLEIMRHNQEDEDRVNKTLIAFAQKHSIKLVAT
NNTYYLEKTDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYYKTQAEMKKLFADL
PDAIINIQEIVDKIEVYSLYRDILLPKFDIPAEFINPEDEKDGGKRGENAYLRFLTYEGA
KRRYKEIDQTITERLDFELKTVENSGYPGYFLIVQDFIAAARQMGVSVGPGRGSAAGSAV
AYCLGITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQI
ITYGKMATKSAIKDAARVLDLPLYESERIAKMVPTMMPSKWNLRRFLSEPEDEIKKVLRS
EEFDAVKELISVANQNDLLSETIQQAKIIEGSMRNTGIHACGVIITPDDITNFVPVQTAK
DSELYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTIAIIKQRTGLEIDPEEIPIDDAKT
YELFQRGETVGVFQYESPGMQKYMRDLKPNVFGDLIAMNALYRPGPLEYIPSFVKRKNGE
EPITYDLDACEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKDVLDKM
KPKFVEQAAAKGHDPKTLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYM
AAVLSNNMNDIKSVTFFMEECRRMGLDVLGPDVNESHYKFAVNENYQIRFGMGAIKGVGE
GAVNTIIEHRKNGSYKSIFDLAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFYTEG
DGVTFLEKAMKYGAKFQENENSAQVSLFGESSEVQIPEPVIPNCDEWTTMEKLAKEKDVV
GIYISGHPLDDFKFELKYFCNVNLEQIKNLEPLVGRTVSFGGMIANVQFKTSSKGKDWAI
FTIEGYDESIEMRMFNEDYLKYRHFLLNNTFVYFKVYIKEGWIKKDTNERSEPRLQFVEL
KLLNEVIPAYAKKIIIQIDVKELKEMQVEKIRMLLDQNPGNKSVVFEVFELEEIQNRIQT
EEIAKLLPDNTEEEAVDSVEEKPAEILLHEVQYVKKNLLEMPSKSKRIEISAELLEELER
LQVMFRLN
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgtatataatttttgatactgaaactaccggtttacctaaaaattggaatgcacctata
actgatgttgacaattggcctagatgtatacaaattgcttggcaattacacgatggaatg
ggtaatgtaattgaatgcgacgattatttaattaaacccaatggttttgatataccttat
gattcagagcgaattcacggaatttctacattgttagcaacacaaaaaggagttgattta
aacgttgttcttcataaatttaatacagcgttggctaaagcaaattttgtagttggccaa
aacgtaggtttcgatttaaatataatgggtgccgaattccatcgtgccgaaattcctaca
aacttaaataaaatgcatgttttagatacatgtaccgaagttacagcagaattacttaaa
ctacctggtgggcgtgggggtaaatttaaattgcccactttaacagaattgcatcaatat
ttatttggcgaaccttttggcgaagcacataatgcaactgccgatgttgaagctacaaca
agatgtttttttgaattgatacgaaaaaatgtatttaccgaaagcgaattaaaacaacca
gccggatatttacaacaatttaaagaggttaacccaaacccatttaagttaattggttta
caacatataaatctaaagcaggcatccgaagatattcgtttgcagttagaagcttcaggg
gttataaaaggcgctgaaaaacaaaaaatatctaccgaagtaaaagcagcatttcaagag
gctgtttttgcacatttgcacaatcatactcaattttcggtattgcaatctaccattgat
attggtgcaatgattaaaaaaacggcaagcgaaaacatgtcggcaattgctatgaccgat
cacggcaatatgatgggagcttttaaatttgtaagtgcaattttagatcataataaaaca
gtaaaaaaagcaaacgaagcagctattgaaaatggcgaagaacctatattatcagaaata
aaaccaattgttggatgtgagttttttgtttgtgaaaatttaaccgataaaagtaaaaaa
gacaacggttatcaaatcgttttacttgcaaaaaataaaaaaggatatcacaatttagct
aagttagcatctatcgcatcaatcgaagggttttattacgttccaagaattgataaacaa
gcgttactaaagtataaagatgatataattgtgctttctggtaacttgtacggtgaagtg
ccaaataaaattttaaacttaggtgaaaagcaagccgaagaagctttactttggtggaaa
gagcattttaaagaagatttttaccttgaaatcatgcgtcataatcaagaggatgaagac
cgtgtaaataaaactttaattgcttttgcacaaaagcacagtataaaattagtagccact
aacaatacctattatttagaaaaaaccgatgccaacgcacacgatattttgttatgtgta
aaagatggcgaaaaacaagctactccaattggtcgtggtcgtgggtatcgttatggttta
ccaaatcaagaatattactacaaaacgcaggcagaaatgaaaaagctttttgccgattta
cctgatgcaattattaatattcaagaaattgttgataaaattgaagtgtattccctttac
cgagatattttattacccaaatttgatattcctgcagaatttatcaaccctgaagatgaa
aaagatggagggaaacgcggagaaaatgcctatttgcgctttttaacttatgagggtgct
aaacgccgatataaggaaattgaccaaaccataaccgaacgcttagattttgaactaaaa
acagttgaaaattcaggttacccaggttattttttaattgtgcaagattttattgcagca
gctaggcaaatgggtgtttctgttggtcctgggcgtggttcagcagctggttcggcggtg
gcatattgtttaggaattaccaatttagatcctataaaatacgacttgctttttgaacgt
tttttaaatccagatcgtgtttcaatgcccgatattgatattgattttgacgatgaaggt
cgtggtcgggttatggattacgttataaataaatacggtgcaaatcaagttgctcaaatt
attacatacggaaaaatggcaacaaaatcggccattaaagatgctgctagagtgttggat
ttacctttgtatgaatcggaacgtatagccaaaatggtgcctactatgatgccaagtaag
tggaatttacgtaggtttttatcagaacctgaagacgaaattaaaaaagttttacgttct
gaagagtttgatgcggttaaagaattaataagcgttgcaaaccaaaacgatttactttct
gaaaccattcagcaagcaaaaattatcgaaggttctatgcgcaacacaggtattcacgct
tgtggggttattattacacctgatgatattaccaactttgtacctgtgcaaacggccaaa
gattcagaattatacgttacacaatttgacaactctgttgccgaaagcgccggtttgcta
aaaatggacttccttggtttaaaaacgcttaccttaattaaagatactattgctattata
aagcaacgaacaggattagaaatcgatccggaagaaattcctatagacgatgctaaaacc
tatgaattgtttcaacgtggtgaaactgtaggggtttttcaatacgaatcgcctggaatg
caaaaatacatgcgcgatttaaaaccaaacgtttttggcgatttaattgccatgaatgca
ttgtatcgcccagggccgttagaatatataccttcttttgtaaaacgtaaaaatggtgaa
gaaccaattacatacgatttagatgcatgcgaagaatatttaaaagaaacttatggaatt
acagtttatcaagaacaagtaatgcttctgtcgcaaaaattagccgatttcaccaaaggt
gaagctgatgttttgcgtaaagcaatgggtaaaaagcaaaaagatgtgcttgataaaatg
aaacctaaatttgtagaacaagctgctgcaaaaggtcacgatcctaaaacattagaaaaa
atttggaaagattgggaagcctttgcaagttacgcgtttaataaatcacactcaacttgt
tatgcatgggtagcgtatcaaaccgcttatctaaaggctcattaccctgcagagtacatg
gctgcggtgctatcaaacaacatgaacgatattaaatcggttactttttttatggaagaa
tgccgccgtatgggcttagatgttcttgggcccgatgtaaatgaatcacattacaaattt
gcggtaaacgaaaattaccaaatacgttttggtatgggagctataaaaggagtaggtgaa
ggagctgtaaataccattatagaacatcgtaaaaacggtagttataagtcgatttttgat
ttagcaaagcgaattgatttaagagcagcaaataaaaaagcatttgaaaatttagcttta
gcaggtggttttgactgttttactgatacccaccgtgcccagtatttttataccgaaggc
gatggagttacctttttagaaaaagcgatgaaatacggggctaaatttcaagaaaacgaa
aactctgctcaagtaagtttgtttggcgaaagcagcgaggtgcaaattccagaaccagtg
attccaaattgtgacgaatggacaactatggaaaaacttgctaaagaaaaagatgtagtt
ggaatttatatatcaggccatccgttagacgattttaagtttgaacttaaatatttttgc
aatgtaaatttagagcaaattaaaaatttagaacctttagtgggtagaactgtaagtttt
ggcggtatgattgccaatgtgcaatttaaaacatcatctaaaggcaaagattgggctatt
tttactattgaaggttacgatgaaagtattgaaatgcgcatgtttaatgaagattatctt
aaataccgccattttttattaaacaatacttttgtatattttaaagtgtatattaaagaa
ggctggattaaaaaagataccaacgaacgatcggaaccaagattgcaatttgtagaacta
aaacttttaaacgaagtgatacctgcttatgcaaaaaaaatcatcattcaaattgacgtg
aaagaactaaaagaaatgcaggtagaaaaaattagaatgttgttagatcaaaacccagga
aacaaatcggtagtttttgaggtttttgaactagaagaaattcaaaacagaattcaaacc
gaagaaatagctaaacttttacccgataacaccgaagaagaagcggtagatagtgtagaa
gaaaagccagccgaaattttgttgcacgaagtacagtacgttaagaaaaaccttttagaa
atgccaagtaaaagcaagcgaattgaaatttcggccgaattgttagaagaactagagcgt
ttgcaagtaatgtttcgtttaaattaa
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