Myroides sp. JBRI-B21084: P3875_10025
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Entry
P3875_10025 CDS
T09249
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mcla
Myroides sp. JBRI-B21084
Pathway
mcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3875_10025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcla03019
]
P3875_10025
Enzymes [BR:
mcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P3875_10025
Messenger RNA biogenesis [BR:
mcla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P3875_10025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Phage_integrase
Utp25_C
CMS1
Cas3-like_C_2
DUF2529
HEM4
DsrH
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WKW46114
LinkDB
All DBs
Position
2095468..2096589
Genome browser
AA seq
373 aa
AA seq
DB search
MNFKDLEIIQPIMKAVTKAGYSKATPIQYKTIPYILNGNDVIGCAQTGTGKTASFAIPIL
QLLTQNKATVKQGIRALILTPTRELAIQISDNFETYGQYLPISYLAIFGGVSQVNQVSQL
RKGVDVLIATPGRLQDLINQGCIDLRTLEIFVLDEADRMLDMGFVNDVKKILKKIPSKRQ
SLLFSATMPSEIRSFAHSFLINPVEINVTPISSTAKSINQSVCFVEKAEKLNLLISILEK
HSIKRSLIFSRTKHGADKLVKQLMKQGIQAAAIHGNKSQNARQNALENFKNNRIRVLIAT
DIAARGIDIDELSHVVNYELPNVPETYVHRIGRTGRAGNNGTAISFCDNEQKKDLKSIQK
LIGFKIPEYTLTT
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaaagatttagaaattatacagcccataatgaaagctgtaacaaaagccggt
tatagtaaggcaaccccaatacaatataaaacaataccctatattttaaacggaaacgat
gtaataggttgtgcacaaactggtacaggtaaaaccgcatcattcgcaataccaatttta
caattacttacccaaaacaaagctacagttaagcaaggtattcgtgcgctaattttaacc
ccaacacgtgaattagcaattcaaatcagcgataattttgaaacatacggtcagtattta
ccaataagttatttagcaatttttggtggtgtatcgcaagtaaaccaagtaagccaattg
cgtaagggcgtagatgtgttaattgcaacaccgggtaggttgcaagatcttattaaccag
gggtgtatagatttgcgaacactagaaatttttgtattagatgaagcagatcgtatgcta
gatatgggttttgtgaacgatgtaaagaaaatcttaaaaaaaatacctagtaaaagacaa
agtttattattctctgcaacaatgccttcagaaattagaagttttgcacatagcttttta
ataaatcctgtagaaattaacgtaacgcctatttcatcaaccgcaaaaagcatcaaccaa
agtgtttgttttgttgaaaaagcagaaaagttaaatttattaatctctattctagaaaag
cattccattaagcggtcattaattttttcacgtacaaaacacggagctgataaattggtg
aagcaattaatgaagcaaggtatacaagcagctgcaatacatggtaataaatcacaaaac
gcgcgtcaaaacgcattagaaaattttaagaataaccgcataagggtattaattgcaacc
gacattgcagcccgaggtatagatattgacgaattatcacatgttgtaaattatgaactt
ccaaacgttcctgaaacctatgtgcacagaattgggcgtacaggccgagctgggaacaat
ggaacggcaatttccttttgcgataacgaacaaaagaaagacttaaaaagtattcaaaaa
ttaattggttttaaaataccagaatacactttaacaacctaa
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