Microbacterium sp. Clip185: PQV94_06315
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Entry
PQV94_06315 CDS
T11497
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mcli Microbacterium sp. Clip185
Pathway
mcli03030
DNA replication
mcli03430
Mismatch repair
mcli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQV94_06315 (dnaE)
03430 Mismatch repair
PQV94_06315 (dnaE)
03440 Homologous recombination
PQV94_06315 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcli03032
]
PQV94_06315 (dnaE)
03400 DNA repair and recombination proteins [BR:
mcli03400
]
PQV94_06315 (dnaE)
Enzymes [BR:
mcli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQV94_06315 (dnaE)
DNA replication proteins [BR:
mcli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQV94_06315 (dnaE)
DNA repair and recombination proteins [BR:
mcli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQV94_06315 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
WDG19352
LinkDB
All DBs
Position
1320111..1323656
Genome browser
AA seq
1181 aa
AA seq
DB search
MSEGCAYPGQVADSFVHLHVHSEYSMLDGAAKIGAMTQAASEYGMPAIAVTDHGNTFAAF
EFYRAAQGAGVKPIIGLEAYVTPGTHRSDKSRVAWGSPDQKSDDVSGSGAYTHMTMWSQT
TEGMHNLFRLSSLSSMEGYYFKPRMDRELLQTYGKGLIATTGCPSGEVQTRLRLGQYDAA
RAAAAEFQDIFGKENYFAEIMDHGLSIERRVMSDLIRLAKDLDIPLVATNDSHYTHQHEA
DAHEALLCVQSGSTLDDPNRFKFDGDGYYIKTAQEMRQLFRDHPEACDNTLLIAERCEVE
FNTSANYMPRFPVPDGETEDSWLVKEVEKGLHYRYPQGIPDRVRKQAEYETGIILQMGFP
GYFLVVADFINWAKDNGIRVGPGRGSGAGSMVAYAMKITDLDPLEHGLIFERFLNPDRVS
MPDFDVDFDDRRRGEVIEYVTEKYGSERVAQIVTYGTIKSKQALKDAGRVLGFPFSMGEK
LTKAMPPAVMGKDMELGGMFNKEHPRYKEASEFRALIESDPEAKTVFDRALGLEGLKRQW
GVHAAGVIMSSEPLLDIIPIMRREQDGQIVTQFDYPSCETLGLIKMDFLGLRNLTIISDA
LDNIRSNRGEELDLEHLALDDRPAYDLLTRGDTLGVFQLDGGPMRSLLRLMKPDNFEDIS
AVIALYRPGPMGANSHTNYALRKNGLQPITPIHPELEEPLRDILDTTYGLIIYQEQVMAI
AQKVAGFSLGQADILRRAMGKKKKSELDKQYEGFSGGMKERGFGDAAIKALWDILLPFSD
YAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAIYLNECRRMGIRVLP
PDVGESINFFAAVGDDIRFGLGAVRNVGSNVVDGIVTSREKEGFTSFHDFLAKVPMHVAN
KRTVESLIKAGAFDSMGHTRRALLEIHEDATEQAVLDKRREANGEVGFDFDSLWGDDEPQ
QVSKVPDRPEWTKKDKLAFEREMLGLYVSDHPLAGLEIPLAKHASTSIHDLLSSESVQDG
DQVTVAGLVTSVQHRVAKQSGNPYGMITVEDFNGEVTVMFMGRTYTEFQSVLQADSILVV
RGRVSRRDDGLNLHAQSCFSPDLGAVDATSALVLVVPEQKATQSVVEELAAVLHRHPGET
EVTLKLHRAGTAKVFEVPHPVTISADLFGDLKGLLGPSCLG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagggctgcgcgtaccctggacaggtggcagactccttcgttcacctccatgtg
cacagcgagtactcgatgctcgacggcgccgccaagatcggcgcgatgacgcaggcggcg
tccgagtacgggatgccggcgatcgccgtcaccgaccacgggaacaccttcgcggcgttc
gagttctaccgggccgcgcagggcgcgggcgtgaagccgatcatcggcctcgaggcgtat
gtgaccccgggaacccaccgcagcgacaagtcgcgtgtggcctggggctcacccgaccag
aagagcgacgacgtgtcgggctcgggcgcgtacacccacatgacgatgtggagtcagacc
acagagggcatgcataacctcttccggctgagctcgctgtcgagcatggaggggtactac
ttcaagccgcgcatggaccgcgaactcctgcagacctacggcaaggggctcatcgcgacg
acgggctgcccgtcgggcgaggtgcagacgcgcctgcgtctcggtcagtacgacgccgcg
cgggcggctgcggcggagttccaggacatcttcggcaaggagaactacttcgccgagatc
atggaccacgggctctccatcgaacgcagggtcatgagcgatctgatccgcttggcgaag
gatctcgacatcccgctcgtcgcgacgaacgactcgcactacacccaccagcacgaggcc
gatgcgcacgaggctctgctgtgcgtgcagtcgggctccaccctcgacgaccccaatcgc
ttcaagttcgacggcgacggctactacatcaagacggcgcaggagatgcgtcagctcttc
cgcgaccacccggaggcgtgcgacaacacgctgctgatcgcggagcggtgcgaggtggag
ttcaacacctcggccaactacatgccccgattccccgtgcccgacggcgagaccgaggac
agctggctcgtcaaagaggtcgagaaggggctgcactaccgctacccgcagggcatcccc
gacagggtgcgcaagcaggccgagtacgagaccggcatcatcctgcagatgggcttcccg
gggtacttcctcgtggtcgccgacttcatcaactgggccaaagacaacggcatccgcgtc
ggtcccggccgcggttccggtgccggttccatggtcgcgtacgcgatgaagatcaccgac
ctcgaccccctcgagcacggtctcatcttcgagcgcttcctgaaccctgatcgcgtgtcc
atgcccgacttcgacgtcgacttcgacgaccgccgccgcggcgaggtgatcgagtacgtc
accgagaagtacggctcggagcgcgtcgcgcagatcgtgacgtacggcacgatcaagtcc
aagcaggcgctgaaggatgcgggccgcgtgctcggcttcccgttctcgatgggtgagaag
ctcaccaaggccatgccgcccgccgtcatgggcaaggacatggagctgggcggcatgttc
aacaaggagcacccgcggtacaaggaggccagcgagttccgcgcgctcatcgagagcgac
ccggaggccaagaccgtcttcgaccgcgcgctgggcctggagggtctgaagcggcaatgg
ggcgtgcacgcggccggcgtcatcatgtcgtcggagccgctgctggacatcatcccgatc
atgcgccgcgagcaggacggccagatcgtcacacagttcgactacccgtcgtgcgagacg
ctcgggttgatcaagatggacttcctggggctgcgcaacctcacgatcatctccgacgcg
ctcgataacatccgcagcaaccgcggtgaggaactcgacctcgagcatctcgccctggat
gaccgacccgcttacgatctgctgacccgcggtgacacgctcggggtgttccagctcgac
ggcgggcctatgcgctcgctcctgcggctcatgaagcccgacaacttcgaagacatctcg
gccgtcatcgcgctgtaccgcccggggccgatgggcgcgaactcccacacgaactacgct
ctgcgcaagaacgggctgcagccgatcaccccgatccatcccgagctcgaggaacctctg
cgagacatcctcgacacgacctacggcctgatcatctatcaggagcaggtcatggccatc
gcgcagaaggtggccgggttctcgctcggtcaagcagacatcctgcgccgcgcgatggga
aagaagaagaagtccgagctcgacaagcagtacgagggcttctcgggcgggatgaaggaa
cgcggcttcggcgacgccgcgatcaaggcgctgtgggacatcctgctgcccttctccgac
tacgccttcaacaaggcgcactccgcggcctacgggctcgtctcctactggaccgcgtac
ttgaaggcgcactatcccgccgagtacatggcggcgctgctgaccagcgtcggcgactcc
aaagacaagatggcgatctacctgaacgagtgccgtcgcatgggcatccgggttctgccg
ccggatgtgggggagtcgatcaacttcttcgcggccgtcggcgacgacatccgcttcggc
ctcggagccgtgcgcaacgtcgggtcgaacgtcgtggacggcatcgtcacctcgcgcgag
aaggaaggatttacctccttccacgacttcctcgcgaaggttccgatgcatgtcgcgaac
aagcgaaccgtcgaatcgctcatcaaagccggcgcgttcgactccatgggtcacacccgc
cgcgcgctgctggagatccacgaggacgcgaccgaacaggccgtgctcgacaagcgccgc
gaggccaacggcgaggtcggattcgacttcgacagcctgtggggcgatgacgagccgcag
caggtctcgaaggtcccggatcgcccggagtggaccaagaaggacaagctggccttcgaa
cgggagatgctcgggctgtacgtctccgaccatccgctcgcggggctggagatcccgctc
gcgaagcacgcctcgacctcgatccatgacctgctctcctcggagagcgtgcaggacggc
gatcaggtcacggtggcgggcctggtcaccagcgtccagcatcgtgtggcgaagcagagc
ggcaatccgtacggcatgatcacggtcgaggacttcaacggtgaggtcaccgtgatgttc
atgggccgcacgtacaccgagttccaatcggtgctgcaagcggattcgatcctcgtcgtg
cgcggacgcgtgtcgcgacgcgacgacggtctgaacctgcatgcccagagctgcttcagc
ccggacctcggagcggtggatgccacgtcggccctcgtcctggtggttccggagcagaag
gcgacccagtccgtcgtggaggagctggccgcggtgctgcatcgccatccgggcgagacc
gaggtgacgttgaagctgcaccgggcgggcaccgcgaaggtgttcgaggtgccgcatccg
gtcacgatcagcgccgatctgttcggtgacctcaagggcctgctcggccccagttgcctg
ggatga
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integrated database retrieval system
