Mycoplasmopsis californica HAZ160_1: MCAL160_0406
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Entry
MCAL160_0406 CDS
T03651
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcm
Mycoplasmopsis californica HAZ160_1
Pathway
mcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCAL160_0406 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcm03021
]
MCAL160_0406 (rpoC)
03400 DNA repair and recombination proteins [BR:
mcm03400
]
MCAL160_0406 (rpoC)
Enzymes [BR:
mcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCAL160_0406 (rpoC)
Transcription machinery [BR:
mcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCAL160_0406 (rpoC)
DNA repair and recombination proteins [BR:
mcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCAL160_0406 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAP01000
UniProt:
A0AAT9F7W8
LinkDB
All DBs
Position
300563..304954
Genome browser
AA seq
1463 aa
AA seq
DB search
MSRYNKDKKTLIDKITLSLATDKDVQSWSNGEVTKPETINYKSYKPEREGLFDEIIFGPT
TDYKCPVCNTKYKRSDENTDCVRTPMCVKHKPKILPKISRRSRMGHIQLKNPVVHFWFFK
IDHSIISKLLGLKVANSSRSVTKSELEKLIYYKSHIVLEDGGLKSLKKNTIIDISEAALV
YFEALKELRENFDPQGDEYDQEAYEVIDEALNDLREQATSKMGQDYGIDFYEYNEIIHEY
SDALISTGSKAIEYLLENVNPQEEADKLEEEIRELSAQIAANPWANAKIQERAKLYKRFS
VINAFIKSGQDPKSMLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLKKW
EESDAPMLIKQNEYRMIQEAVDSLIDNARRKPNPVASKDGRPFKSISDALTGKKGRFRQN
LLGKRVDYSGRSVIVVGPELKMHQVGIPREMAAKLFEPWIINELIKSDKNSINSIKAGKK
AVENLDPIIWPYVEKAIEGRPVLLNRAPTLHRLSIQAYEPVLIRGKAIKLHPLSCTPFNA
DFDGDQMAVHVPISPEATREARELMLASKNILGPKDGEPIINPGQDMILGLYYLTMEKAG
GLGEGRFFATYEDMLTAYENKAVSIHSRVVLPIEQANKKWINSDEKNKYIISTVGKFIFN
RAFPNTFEFIFGKYITPDGKEIVHTSAKGEHLSHYLLPAGSNFPELIAQMPINLALTKKD
IAKIVRRVYDQYVSVICMEDLAAILQDINSNDLDKIFEKCASLTTYNNETLNSSHAEILT
KLITEEFNKINHSVLNRNELKIPAWNIEDHTLLLEKVWFKYTNVVANVLDKIKSLGFHFS
TISGTTIAVSDVITLPSTKDKIKEGEAYIEKLKSFFAEGMLTDDERYSLSIKKWAEIKNS
IEDELKKVTKSDPHNPLFMMFTSGARGNSSNFVQLAGMRGLMNNNVKILKADAENERVVR
STVEIPVKSSFLEGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVVREE
DCGTDYGFVVRDIKDSKTNTIIESLAERIEGRFTNKPVIDADGNQIIGVNELITPEIASQ
ISENGIEEVEIRSVLSCYTRNGVCKKCYGKDLALNRVVNIGEAVGVVAAQSIGEPGTQLT
MRTFHTGGVAGVVDITGGFGRLMELIDAYDSPWGRPAIIAPGYGRVNSITTPFDHGRDFK
VIEIEIYNEKGELETIKYETKADRRIVVKEGQKLQPGQKIVEGPIVLGDLLKYADTRSVQ
NYLLKEIQKLYRLQGISIADKYIEIIIRQMLSKVLITDPGDSRFFSGSLVDILAFQKESA
RLLAKGQKPPFGEVKIKGAKQTPLLSDSFLAAASYQETPKILVNASIASQTDNLEGLKEN
IILGHKIPAGTNSNFELKGKYDIRDPRSYFSGKYEDISADIEQPHDFIFDMEIDHQQDID
EMFRQFNVHEVEDNFSLLEEEIE
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgagtagatataataaagataagaagactttaattgataaaatcactctatcattagcc
actgataaagatgtacaatcttgatcaaatggtgaagttacaaaaccagaaaccattaat
tataaaagttataaacctgagcgcgagggactttttgatgaaataatttttggtccaaca
accgattacaaatgtccagtatgtaacacaaaatacaaaagaagcgatgaaaatacagat
tgtgttcgcacccctatgtgtgtaaaacacaaaccaaaaattttgccaaaaataagccgt
cgtagtcggatggggcacattcaattaaaaaatccagttgttcatttctgatttttcaaa
atcgaccattcaattatttcgaagcttttaggtttaaaagtagcaaatagttctcgctcg
gttacaaaatctgagttagaaaaattaatttactacaaaagccacatcgtcttagaagat
ggtggtctaaaatcacttaaaaagaatacaattattgatattagtgaagctgcacttgtc
tattttgaagcgcttaaagaattacgtgaaaatttcgatccacagggcgatgaatatgac
caagaagcttacgaagttattgatgaagctcttaatgatttacgtgagcaagcaacatca
aaaatgggtcaagactatggtattgacttttatgaatataatgaaattatccacgaatat
tctgatgcgttaatttccactggttctaaagctattgagtatttattagaaaatgtaaac
ccacaagaagaagctgacaagttagaagaagaaattcgtgagttaagcgctcaaatcgcc
gcaaatccttgagcaaatgctaaaattcaagaaagagccaaattatataagcgtttttca
gtaattaatgccttcattaagtcgggacaagatccaaaatcaatgttaatatacaacctt
cctgttatccccgccgacttacgtccgctagttcaattggatggcggtcgccactcaaca
agtgatattaatgaattgtaccgtcggatcattatccgaaataatcgtttgaaaaaatga
gaagaaagcgatgctccaatgttgattaaacaaaatgagtatcgtatgattcaagaggct
gtcgattctttaattgacaacgccagaagaaaaccgaatccggtcgcttcaaaagatggt
cgtccatttaaatcaatttctgatgccttaactggtaaaaaaggtcgtttccgtcaaaac
ctactaggtaaaagggttgattattcaggtcgttcagttattgttgttggtccagaatta
aaaatgcaccaagtcggaattccacgagaaatggcagcaaaattatttgagccttgaatc
attaatgaattaattaaatcagacaaaaactcaatcaattcaattaaagcgggtaaaaaa
gcggttgaaaatctagatccaattatttggccatacgttgaaaaagccattgaaggccgt
cccgtattacttaaccgtgctccaacattgcaccgtttaagtattcaagcttatgagccg
gtgctaattcgtggaaaagcgattaaattacacccactttcatgtaccccttttaacgct
gacttcgatggtgaccagatggctgtgcacgtaccaattagtcctgaagctactcgtgaa
gcccgtgaattaatgcttgcttccaaaaatattctaggtccaaaagatggtgagcctatt
attaacccaggacaagacatgattttaggtttatattacctaacaatggaaaaagcgggg
ggattaggtgaaggtagattctttgcaacttatgaagatatgctaacagcatatgagaat
aaagcagtaagcattcactctagagttgtattaccaatcgaacaagcaaataaaaaatga
attaacagcgatgaaaaaaacaagtatattatttcaacagttggtaaatttatttttaac
cgtgcttttccaaatacttttgaatttatttttggtaaatatattacccctgatggaaaa
gaaatcgttcacacatcagctaagggagaacatttaagtcattatttactgcctgcgggc
tcaaattttcctgaattgattgcacaaatgccaattaatttagcacttaccaaaaaagac
atcgctaagattgttcgtcgtgtttatgaccaatatgttagtgttatttgcatggaagat
ttagcggctattttacaagatattaatagcaatgatttagataagatttttgaaaagtgc
gcttctttaactacttacaataacgaaactttaaatagttcgcatgctgagattttaact
aaattaataacagaagaattcaataaaattaatcacagtgttttaaaccgtaatgaatta
aaaataccagcctgaaatattgaagatcacacattattactggaaaaagtatgatttaaa
tacactaatgttgtcgccaatgttcttgacaaaattaagtcattaggttttcatttttca
acaatttcaggaacaacaattgctgttagtgatgtaatcactttaccttcaaccaaagac
aaaattaaagaaggtgaagcttacattgaaaaattaaaatcgttctttgctgaaggtatg
ttaaccgatgatgaaagatactcattatcaattaaaaaatgagcagaaattaaaaattct
attgaggatgagttgaaaaaagtaactaaatctgatcctcataacccattattcatgatg
tttacatcaggggcgcgtggtaactcaagtaacttcgttcaactagctggaatgcgtgga
ttgatgaataacaacgttaaaattcttaaagccgacgccgaaaatgaaagagttgttcgt
tcaactgttgaaattccagttaaatcttcattccttgaaggtctaacagcttatgaattc
tattcatctacccacggggctagaaaaggactaactgatactgctcttaacacggctaag
tcaggttacttgacacgtcgtttagtggacgttgcacaaggtattgtggttcgcgaagaa
gattgtggaaccgattatggctttgttgtccgtgacattaaggactcaaaaacaaacaca
attattgagtcattagctgaaagaatcgaaggacgtttcactaacaaacctgttattgat
gctgatggaaatcaaattataggcgttaatgaattaataacacctgagattgctagtcaa
atcagtgaaaatggcattgaagaagttgaaataagatcagttctgtcttgctacacacgt
aatggtgtatgtaaaaaatgttacggaaaagatttagcattaaaccgtgttgttaatatc
ggagaggcagttggagttgttgcagcgcaatcaattggtgaacccggaacgcagctaact
atgcgtactttccacaccggtggtgttgccggggttgttgatattacaggtggttttggt
cgtttgatggaattaatcgatgcttatgattcaccttgaggacgtccggctattatcgca
cctggatacgggcgcgtgaattcaatcacaactccatttgaccacggccgcgattttaag
gttatagagatagaaatttataacgaaaaaggcgagttagaaactataaaatatgaaacg
aaagctgaccgtcggattgttgtcaaagaaggacaaaaactacaaccagggcaaaaaatt
gttgaaggacctattgttttaggcgatttattaaaatatgctgacacacgttcagttcaa
aattacttattaaaagaaatccaaaaactttatcgtttacaaggtatctcaatcgctgac
aaatatattgaaattattattcgtcaaatgctttcaaaagttctaatcacagaccctgga
gattctagatttttctcaggttcattagtcgatatcttagcattccaaaaagaatcagca
cgtttattagctaaagggcaaaaaccaccatttggtgaggttaaaattaaaggggctaaa
caaacgccgttattatctgattcgttcttggctgccgcttcatatcaagaaacgccaaaa
attttagttaacgcttcaattgcgtcacaaactgataatctagaaggtttaaaagagaat
attattttaggtcataaaattccagcgggtacaaactcaaattttgaacttaaaggaaaa
tatgatattagagatcctcgtagttactttagtggtaaatatgaagatatatctgccgat
attgaacaacctcatgatttcatttttgatatggaaatagatcatcaacaagatattgat
gaaatgtttagacaatttaatgttcatgaagtagaagacaatttcagtttacttgaagag
gaaattgaataa
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