Mycoplasmopsis californica HAZ160_1: MCAL160_0787
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Entry
MCAL160_0787 CDS
T03651
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mcm
Mycoplasmopsis californica HAZ160_1
Pathway
mcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCAL160_0787 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcm03019
]
MCAL160_0787 (vacB)
03016 Transfer RNA biogenesis [BR:
mcm03016
]
MCAL160_0787 (vacB)
Enzymes [BR:
mcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MCAL160_0787 (vacB)
Messenger RNA biogenesis [BR:
mcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCAL160_0787 (vacB)
Transfer RNA biogenesis [BR:
mcm03016
]
Prokaryotic type
tRNA degradation factors
MCAL160_0787 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
Symplekin_C
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAP01202
UniProt:
A0AAT9F8I6
LinkDB
All DBs
Position
605285..607459
Genome browser
AA seq
724 aa
AA seq
DB search
MISIEKIYNYIKAKKRCNYLSIAKGLQVPYNKSKQLTIALKEMVEKHKIILFRDNTYSIL
VPKGTIEGVIKYSKDARFGFIDLDEENDGEKVSYFVPGSSFNNAYTGDFVKAEVYEYFEN
SSLKVFAHITEVIKRKEAKIPGIIELNNSVITFKPIKNDYANTRFVINEFKIDARLDDLV
LAKICAWKQNELHVDIVEKVSNISDPLCYVKSLLAEREMPKGFEKEVQKEADLIPDKIDP
KGMKNRVDFRDELIVTIDGENTKDFDDAISVKKINNSYYELAVHIADVSYYVHENSEIDK
EALKRGTSTYLANKVIPMLPEKLSNGICSLNPNEDRFTMSIIINIDNNGHTMDARLVQGV
INSKYRLTYKRVNEFIESKKRFEDQSLNKMLNLAWELTQKIRKVKLSEGYIDFEIEEPKI
ILGDKDQVVDVIVDSSGPSERMIEDFMVRANEETAKILTKAKIPVMYRIHDVPSEEKILT
FKQVMNALNIKIELDSMNLTPLSFQQAIEKIKKQRFDSFLQIMFLRTMSKAVYNPENIGH
FGLASEHYCHFTSPIRRYPDLMVHRAIRDVLINNDRTKIEHMRKILPTISEMNSEAEQKA
LQIERDTNDLLYAEYFRNKIGQSFNCQIVSVLKFGMFVEFENKTNALVHISTLSDDEYEI
NDDSTAIIGKNTKNKYRLGDKVAVVILKSDPINGKVDACLVKNYSDYFSNIKQNLKQRSK
NSKK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatttcaattgaaaaaatatacaactatataaaagcgaaaaaacgttgcaattatctt
tcaattgcaaaaggcttgcaagttccttacaataaaagcaaacagctcacaatcgctcta
aaagaaatggttgaaaaacacaaaatcatactatttagagacaatacctactcaattctc
gttccaaaaggaacaattgaaggagttattaaatactcaaaagatgctcgttttggtttc
attgatcttgatgaagaaaatgatggtgaaaaagtatcgtattttgttccagggagtagt
tttaataacgcctacacaggcgattttgttaaagctgaggtttatgaatactttgaaaac
agctctctaaaagtttttgcacatattacggaagtaattaagcgtaaagaagctaaaatt
ccaggaattattgagttaaataactcagtgattacgttcaaaccaatcaaaaatgactat
gctaacacccgtttcgtgattaatgagtttaaaatagatgcccgtttagatgatttagta
ttagccaaaatttgcgcatgaaaacaaaacgaactacatgtcgacattgttgaaaaagtt
tctaatatttctgatcctctttgctatgtaaaatcacttttagctgaacgcgaaatgcca
aaagggtttgaaaaagaagttcaaaaagaagctgacttaatccctgataaaattgatccg
aagggaatgaaaaatagagttgattttcgtgatgagttaattgttacaatcgatggcgaa
aataccaaggattttgacgatgcgatttctgttaaaaaaattaataattcgtattatgaa
ttagctgttcatattgcggatgtaagctattatgttcatgaaaatagtgaaattgataaa
gaggcgttaaaacgcgggacatccacttatttagctaataaagttataccgatgttgcca
gaaaaattatcaaatggaatttgctctctaaatccaaatgaagatcgtttcactatgtct
atcattatcaacatcgataacaatggccatacaatggatgcacgattagttcaaggggtc
attaattcaaaatatcgtttaacttataaacgcgtcaatgaatttattgaatctaaaaaa
cgttttgaagaccaatcgttaaacaaaatgttaaatttagcctgagaattaacacaaaaa
atccgaaaagttaagttaagtgaaggttatatcgactttgaaatagaggagccaaaaatc
attttaggagataaagaccaagttgttgatgttatagtagattcatctggaccaagtgaa
agaatgattgaagactttatggtgcgtgctaatgaagaaacggctaaaattttaacaaaa
gctaaaatccctgtaatgtatcggattcacgatgtgccttctgaagaaaaaattctaact
tttaaacaagttatgaatgcattaaacattaaaattgaacttgattcaatgaatttaacg
cctctttcattccaacaagcaattgaaaaaatcaaaaagcaaagatttgatagttttcta
caaattatgtttctgcgaacaatgtcaaaagctgtttataaccctgaaaatatcggacat
tttggattagcgagtgagcattattgccacttcacaagcccaatccgtcgttatcctgat
ttaatggttcatagagctattagagatgttttgatcaataatgatcgaactaaaattgag
cacatgcgaaaaattttgccaacaattagcgaaatgaatagtgaagctgaacaaaaagcg
ttacaaatagaacgtgacacaaatgatttattatatgctgaatatttccgtaataaaatt
ggacaaagctttaattgtcaaattgtcagcgttttaaaatttggaatgtttgttgaattt
gaaaataaaactaatgctttagttcatatttcaacattaagtgatgatgaatatgaaata
aatgatgattcaactgcaattatcggaaaaaatacaaaaaataaataccgtttaggtgac
aaagtagctgtcgttattttaaaatccgacccaattaatggtaaagttgatgcttgttta
gttaaaaactatagtgattattttagtaatataaagcaaaacctaaaacaaagatcaaaa
aatagtaaaaaataa
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