Metallosphaera cuprina: Mcup_0089
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Entry
Mcup_0089 CDS
T01467
Name
(GenBank) tRNA-splicing endonuclease subunit alpha
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mcn
Metallosphaera cuprina
Brite
KEGG Orthology (KO) [BR:
mcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcn03016
]
Mcup_0089
Enzymes [BR:
mcn01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Mcup_0089
Transfer RNA biogenesis [BR:
mcn03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Mcup_0089
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
TSEN34_N
Motif
Other DBs
NCBI-ProteinID:
AEB94199
UniProt:
F4FY01
LinkDB
All DBs
Position
complement(79118..79666)
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AA seq
182 aa
AA seq
DB search
MQFSGELLGDKIVVFDVNEARAIYDLGFYGKPLGIAKPRSTKDITKPLELSLLEGLFLAE
QDILKVSHLGKVMSVQDIESYANSIIAKFKPLYLVYKDLKRRGFIVRSGIKFGADFAIYT
LGPGIEHAPFVISVLDGSEKISVNELMSYGRVSHSTRKKLVLAIVNPRLNEIKYIMFKWV
KM
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcaggggaattactaggagataaaattgtagtgtttgatgtaaatgaggct
agagctatttacgatttagggttttatgggaaacccttaggcatagctaaacctagatcg
acaaaagacattacgaagcctttagaactttctcttctagaaggtttgtttctagccgaa
caagatatcttgaaggtttcacatttgggaaaggtaatgagcgtccaggatatagaatcc
tatgccaactctatcatagctaagttcaaaccactttatttagtgtataaagatctgaaa
aggagaggatttattgttagatcaggaataaaattcggtgcagatttcgctatttacact
cttggacctggtatagaacatgcgcctttcgtgatctcggtccttgacggatctgaaaaa
atttcggtgaacgagttgatgagttatggaagagtatctcacagcacaagaaagaaactt
gtcttagccattgttaaccctcgccttaacgagataaagtacataatgtttaaatgggtg
aagatgtga
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