Metallosphaera cuprina: Mcup_0477
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Entry
Mcup_0477 CDS
T01467
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mcn
Metallosphaera cuprina
Brite
KEGG Orthology (KO) [BR:
mcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcn03016
]
Mcup_0477
Enzymes [BR:
mcn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mcup_0477
Transfer RNA biogenesis [BR:
mcn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mcup_0477
Prokaryotic type
tRNA splicing ligases
Mcup_0477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEB94584
UniProt:
F4G085
LinkDB
All DBs
Position
complement(431262..432644)
Genome browser
AA seq
460 aa
AA seq
DB search
MKVPATVFADDVLIEKMKQDMTLKQASNVACLPGVQESVYVLPDGHQGYGFPIGGIAATS
IDEEGVVSPGGIGYDINCGVRLLRTNLDYHEVKPKLVDLIEEIYNSVPSGVGSESKVKLS
SQELDNLLQEGVRWTIDKGYGWKDDMNNIEQNGSWELADPTKVSQVAKQRGASQLGTLGA
GNHFLEVQVVDKIYDERIAKALGVTREGQVTVMIHTGSRGLGHQIASDYLQIMERAMKKY
GINIPDRELAAIPFNSREGQDYFRAMVAGANFAWSNRQLITNWVRESFGKVFKSDPEKLD
LHIIYDVAHNIAKIEEYEVERKRKKLLVHRKGATRAFPPGSPEIPSVHREVGQVVLIPGS
MGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNYPANSVVGSLEEKGIIVRAATRR
VVAEEAPGAYKDVDRVARVAHEVKIAKLVMRLRPIGVTKG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcccagctactgtatttgcagacgacgtacttatcgagaagatgaaacaagat
atgacgcttaaacaagcatcaaacgtggcctgtttgccaggggtgcaagagtcagtttac
gtattgcctgatggacatcaaggttacggtttcccaattggagggatagctgctacctcc
atagatgaggaaggagttgtcagcccaggaggtataggttacgacataaattgtggggtt
agattgctaagaacaaacttggactatcatgaggtcaagcctaagctagtagacctgata
gaggagatctacaatagcgtccccagcggggtagggagcgagagtaaggtaaagctctcc
tctcaggagttggataatctactccaagaaggtgtaagatggaccattgacaaaggttac
ggctggaaagacgacatgaacaatatagagcagaacggtagctgggagttggcagatcca
actaaagtgagccaagtagccaaacaaagaggtgcgtcacagctaggtacgctaggtgcg
ggtaatcacttccttgaagttcaggttgttgacaagatctacgacgagaggatagctaag
gcgttaggtgtaaccagggaaggtcaggtaactgtaatgattcatactggatcgagaggg
ttaggacatcaaatagctagtgattatttacaaatcatggagagggctatgaagaaatac
ggtatcaacataccagatagagagctagcagccatcccgttcaacagtagggaggggcaa
gactattttagagctatggtagctggggccaactttgcttggagcaacaggcaattaata
actaactgggttagggagagctttggtaaggttttcaagtcagacccagaaaagctagac
cttcatataatctatgacgtggcccataacatagctaaaatagaagagtatgaagtagaa
agaaaaaggaaaaagcttctagttcatcgtaagggcgcaactagggcctttccaccaggc
agccctgagataccgtcggttcatagggaggtgggccaggttgtgttgattccaggaagt
atgggtacagccagttacgttatggctgggatccctgagggtagaagaacctggttcaca
gcacctcacggtgctggaaggtggatgtcaagggaagctgcggttaggaattaccctgct
aactcagttgtgggctctttagaagaaaagggaataatagttagagctgcgacacgaaga
gtcgtagccgaagaggctccaggtgcgtacaaggacgttgatagagttgctagggtagct
cacgaggtgaagatagctaagcttgttatgagattgagacccattggggtgaccaagggt
tga
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