Metallosphaera cuprina: Mcup_1981
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Entry
Mcup_1981 CDS
T01467
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
mcn
Metallosphaera cuprina
Pathway
mcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mcup_1981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcn03019
]
Mcup_1981
Messenger RNA biogenesis [BR:
mcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mcup_1981
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Mcup_1981
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Paralog
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Motif
Pfam:
ECR1_N_2
KH_6
S1_RRP4
RRP40_S1
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
AEB96083
UniProt:
F4G1S6
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All DBs
Position
complement(1791178..1791921)
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AA seq
247 aa
AA seq
DB search
MSGENKIYLQDKSIVVPGDLIAEGNFQIPWSPYIIKQSNKYFASVVGILEIKEPVFEVIP
LEGSHYYPRIGDTVIALVKDVEQYGWIVDIKAPYSAYLPAASLLGRPANVGEDLRRYIDV
GDFVIAKLESFDRTSDPTLSVKGKGLGRVSTGTVIDVLPVKVPRIVGKGRSMMDTLSTET
GCDLIVAQNGRVWANCPSIEKEKILITAIRTIEQESHTKGLTDRIKKLIKESLGDKSVTS
SEAQTNT
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgagaataaaatatatctgcaagataagtcgatagttgtacctggggattta
atagcagaagggaattttcagataccttggtccccttacataatcaagcaaagcaataaa
tattttgcttctgttgtaggtattttggaaataaaagagccagtatttgaagttataccg
ctagagggctctcactattatccgcggataggtgatacagtaatagctctggtaaaagat
gtagagcaatatggttggattgtggatataaaagctccctattcggcttacctaccagcg
gcctcgttattagggagaccagcgaatgtaggtgaagatctaaggagatacatagatgtt
ggtgacttcgttatagcaaaattagagagctttgataggacaagcgatccaaccctttca
gtaaaaggtaaaggacttggtagggtatctacagggacggtaatagatgtgcttccagta
aaagttcctaggatagtgggaaagggcaggagcatgatggacacactgagtactgaaact
ggatgcgatctgatagtggcccaaaacgggagggtatgggcaaattgtccttctatagag
aaagaaaaaatactaataaccgcaatcaggacaattgagcaggagtctcacacaaagggt
ctgactgatagaattaaaaaacttataaaagaatctttaggtgataagagtgttacaagt
tcagaagcccaaactaatacttga
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