Mycoplasmopsis columbinasalis: NCTC10184_00012
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Entry
NCTC10184_00012 CDS
T07140
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
mcob
Mycoplasmopsis columbinasalis
Brite
KEGG Orthology (KO) [BR:
mcob00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC10184_00012 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcob03021
]
NCTC10184_00012 (rpoD)
Transcription machinery [BR:
mcob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC10184_00012 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
WHD_MCM8
HTH_3
Motif
Other DBs
NCBI-ProteinID:
VEU77800
UniProt:
A0A449B9E6
LinkDB
All DBs
Position
1:complement(28464..30053)
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AA seq
529 aa
AA seq
DB search
MAKTIKKEILPVVELVEKYAETQGKKQLSQQDLYDYLNKIQVEVTDSEMDDFYDALMQKG
LLSDETNQGDLDDVSDFDFSSEGVDLDLDEDEISSDPDGEHDSERTTAPTHRESDYDDYD
DEDEEEAQPNRKKEKKARNDDEYDDFDPEMAGYLSDYDLGSDYDDDEYAYDYDDEDYYSD
ESSYADDEEEVDEEKPKGKRGKKKLEQLELENFDNDNDIVLNSNGQKKSVKELRNKLTET
QDIVKWYMRWIGKYGKLLTKEEEEKLAQEMDNGGFRGKRARDKLIKRNLRLVINNAKKYK
NRGLSFIDLISEGNSGIVKAVQKYDVRTGYKFSTYATWWIRQAITRAVADQARTIRVPVH
MVETINKLSKVERDLQQELGREPTDEEIAKRFDNNYTAAKVRYIRKINVDPISLDKQIGK
ENDSSFSDFVKDETITSPVDYASSEELVHNLDKILRETLDDEEYTLICKRYGVGHNPEDD
NKPFRLHSLEELAAERGVSKERIRQIENKILKKVKNSSKNAKNLKDYAH
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccaagactattaaaaaagaaatcttaccagtagttgaattggtggaaaaatacgca
gaaactcaaggaaagaaacaactaagccagcaggatctctatgactatctaaataaaatt
caagttgaagtgactgatagtgagatggatgatttttatgatgccttgatgcaaaaaggt
ttgctttctgacgaaaccaaccaaggcgatcttgacgatgtgagtgattttgattttagc
agcgaaggtgttgatttagatcttgacgaagatgaaattagttccgaccctgacggtgaa
cacgactcagaacgtaccacggcaccaacacatcgtgaaagtgattacgatgattacgat
gatgaggacgaagaggaagcacaaccaaatcggaaaaaagagaaaaaagctcgcaacgat
gacgaatacgatgacttcgaccctgagatggcgggttacttgagcgactatgatcttggc
tctgactatgacgatgacgagtatgcttatgattacgatgacgaagactattattcagac
gaaagttcttacgctgatgacgaagaagaagtggatgaggaaaaaccaaaaggtaaacgt
ggcaagaagaaactcgaacaactagaacttgaaaactttgataatgacaacgatattgtg
ttaaatagtaacgggcaaaagaaaagtgtgaaagaactccggaacaaacttactgaaacc
caagatattgtcaagtgatatatgcgttggattggtaagtacggaaaattactcaccaaa
gaggaagaagaaaaacttgctcaagaaatggataatggtggtttccggggcaaacgcgct
cgtgataaactcatcaaacggaacttgcggcttgtaattaataatgcgaaaaaatacaaa
aacagaggtttaagttttattgacttaatttctgagggaaatagtggtattgtcaaagct
gtgcaaaaatatgacgtgcggactggttacaagttttcaacttatgccacctggtgaatc
cggcaagcaatcacccgtgctgttgccgaccaagcgcgtaccatccgggtaccagtacat
atggtcgaaaccatcaataaactttcaaaagttgagcgggacttacaacaagaacttggt
cgtgaaccaactgacgaagaaattgctaaaagatttgacaacaattacaccgctgccaag
gtgcgttacattcgtaaaattaatgtcgatcctatttcacttgataaacaaattggcaag
gaaaacgattcttcgtttagtgattttgtcaaagacgaaactatcaccagcccagttgac
tatgcctcaagcgaagaattggtgcacaacttagacaaaattttgcgtgaaacactcgat
gatgaagagtacaccctcatttgtaaacgttacggtgttggccacaatccagaggatgat
aacaaaccatttcgtttacactcactcgaagaattagcagccgaacgtggtgtttcgaag
gaacgcatcagacaaattgaaaataaaattctcaagaaagtgaaaaatagttcgaaaaac
gcaaagaacttaaaagattatgcccactaa
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