Mycoplasmopsis columbinasalis: NCTC10184_00155
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Entry
NCTC10184_00155 CDS
T07140
Symbol
rnjA
Name
(GenBank) hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mcob
Mycoplasmopsis columbinasalis
Pathway
mcob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10184_00155 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcob03019
]
NCTC10184_00155 (rnjA)
Messenger RNA biogenesis [BR:
mcob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10184_00155 (rnjA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Motif
Other DBs
NCBI-ProteinID:
VEU77940
UniProt:
A0A449B9R7
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Position
1:complement(224940..226592)
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AA seq
550 aa
AA seq
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MNHISIFALGGLDENEKNCYVLEWNEKIFIINAGTKIPINSTNGIDTLIPNFDYLVKNKD
RIQGIFISDVKSDTFSALPWLLMQIPNLKIYTSEFNKLMILDRLSKYRISNAAYKIFVLK
DVKKFDDIFIQPIDIAGSMPGCLGFDFITPDGDVLFMFNFVEGNLGIYGKLSFDSLAKNF
TKRKLLALVVDAGRVNLNGKAIEKIALPQSIKEVFLNAGPKERIIVSAYDEEMASIQQIL
DLAYKTKRPVVTYGKTYGQVFELIRNTYSKLNWPNAIDYRNANKIPNAVVLVTGSINRLF
SRFLRITEKNDVFLSLNANDNVLFLSPAVNGLEKLEALTLDEIAKVTSKIYDVSSSEFYR
HRPARQDIIDLVTKTKPQYVIPVEGLYRYLSDAQRYIAKECKMKENQILVLQNGRIAHFI
DGKLASSKGKVKEVGETIIDGYGIGDISSEVVMEREVLGREGVIVVSVLFDSKTKKLVSK
IQINFVGSISKEAKKDASELIKQVILKILEEEKFANIKELQNRARQVIKRKIFKNYDKEP
LVVVTFQQIS
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatattagtatctttgctcttggcggtttagatgaaaatgaaaaaaactgctat
gttttggagtgaaacgaaaaaatatttattatcaatgctggaacaaaaattccgattaat
tcaaccaatggaattgacactttaattccaaattttgattatttagtcaaaaacaaagat
cgtatccaaggcatttttataagtgatgtcaaaagtgatacttttagtgctttgccatga
ttattaatgcaaattcctaatttaaaaatttacacttctgaatttaacaaattaatgatt
ttggatcgtttgtctaaatatcgtattagcaatgctgcatacaaaatttttgttctcaaa
gatgtgaagaaatttgatgacattttcattcaaccaattgatattgctggttcaatgcct
ggttgcttaggttttgattttattactccagatggtgatgtactttttatgtttaacttt
gttgaaggaaatttaggtatttatggcaagttaagctttgatagcttagccaaaaatttt
actaaacgtaaacttttagctttagttgttgatgctggtagagtaaatttgaatggcaaa
gcaattgaaaagattgctttaccacagtcaataaaagaagtttttttaaatgcaggacca
aaagaaagaattattgtaagtgcttacgatgaagaaatggcatcaattcaacaaattcta
gacttagcttacaaaacaaaacgtccagttgttacttatggcaaaacttacggtcaagtg
tttgaactaattagaaatacttatagtaaattaaattgaccaaatgctatcgattatcgt
aacgcaaataaaataccaaatgctgttgtgcttgtaactggatcaattaatcgtctcttt
agtcgttttctaagaattactgaaaaaaacgatgtctttttatcgttgaacgctaatgat
aatgtgctttttctttcgccagcagtaaatgggttagaaaaattagaagcgttaacactt
gatgaaattgctaaagttacttctaaaatttatgatgtttcttcttctgaattctatcgt
caccgtcctgcacgacaagacattatcgatctagtaaccaagactaaaccacaatatgta
attccagtcgaaggtctttatcgttatttaagtgatgcacaaagatatattgccaaagaa
tgcaaaatgaaagaaaatcaaattttagtgttgcaaaatggtcgaattgctcactttatt
gacggcaaattagcttcctcaaaaggaaaagtcaaagaagttggtgaaaccattatcgac
ggttacggaattggtgatatatcttctgaagtcgtgatggaacgtgaagttttagggcgt
gaaggtgtaattgtcgtgagcgttttattcgattctaaaactaaaaaactagtttctaaa
attcaaattaatttcgttgggtcgattagcaaagaagcaaaaaaagatgcttcagaatta
attaaacaagtaattttaaaaattcttgaagaggaaaaatttgctaatatcaaagaatta
caaaacagagcacgtcaagttattaaaagaaaaattttcaaaaattatgacaaagaacca
cttgtagtggtgacatttcaacaaattagctaa
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