Mycoplasmopsis columbinasalis: NCTC10184_00183
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Entry
NCTC10184_00183 CDS
T07140
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcob
Mycoplasmopsis columbinasalis
Pathway
mcob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10184_00183 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcob03021
]
NCTC10184_00183 (rpoC)
03400 DNA repair and recombination proteins [BR:
mcob03400
]
NCTC10184_00183 (rpoC)
Enzymes [BR:
mcob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10184_00183 (rpoC)
Transcription machinery [BR:
mcob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10184_00183 (rpoC)
DNA repair and recombination proteins [BR:
mcob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10184_00183 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF5621
Motif
Other DBs
NCBI-ProteinID:
VEU77968
UniProt:
A0A449B9Z1
LinkDB
All DBs
Position
1:complement(261133..265794)
Genome browser
AA seq
1553 aa
AA seq
DB search
MSKWINNNHTHKLLDAPIKRITLSLANREDVSAWSMGEVTKPETINYKSYKPEREGLFDE
LIFGPTTDYKCPTCGTKYKKSDENSTCTKTPMCEKFQSKILPKISRRSRMGHISLQNPVV
HFWFFKIDHSIISKLLGLKVAGTNRPVAKADLEKLIYYKSHIILEDGGLKSLKKNTIIDI
SEAAIIYQEALLELRNRFDQSTEEYELINESLEELQEYATSKVGKDYGIDFYEYNEVIHE
YSEAKIDTGSRAIEYLLKKVDLQAEAAQVEEEIKRINNQIALNPASTKIQERSKLYKRLA
VLNAFINSGQSPLDMLIYDLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLRKW
EETDAPMLIKQNEYRMIQEAVDSLIDNARKKPNPVSSKDGRPLKSISDALTGKKGRFRQN
LLGKRVDYSGRSVIVVGPELKMHQVGIPREMAAELFEPWIIKELIQGDNHINSIKAGKKA
IENLDPIIWPYVEKAIQGRPVLLNRAPTLHRLSIQAFEPVLIRGKAIKLHPLTCTPFNAD
FDGDQMAVHVPISDEAVREARELMLASKNILGPKDGEPIINPGQDIILGLYYLTTEQEGV
AGEGRYFGTYDELMTAYENNQVHLHARVVLPLEEINKYFHLWNYNRNNHYVVSTVGKFIF
NRLFPESFEFLFGKYVDPISGKEVQHSSADYEQVNRYLLPYGTDFKAYISSLSLNAPLGK
KDISKIVRNVYNSYVATINMESLASVINDINEILADPTYDAHDVQNNLLLQRLQGLQDYK
HEPLAWSHAIILENIIRKEHKVIFDQIKRQMHLSQSEDELGKTNHTQPLWEVKHYTALLD
KVWFQYTNIVASILDQLKETGYHYSTISGTTIAVSDVLTDPNTKTKIQEGDKYIEELKSF
FDQGFLTDDERYSLTIEKWTRIKEDIESDLKKLTKQHPHNPLFMMFSSGARGTSSNFVQL
AGMRGLMNNNTKILKADAENERVVRSTVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDMA
LNTAKSGYLTRRLVDVAQGIVVKEDDCGTDYGFVVEDIRDTKTNTIIESLLERIEGRFAN
KTITDAAGNVLVHAGELITPELANDIVNAGIEQVEIRSVLSCYTRNGVCKKCYGKDLALN
RVVNIGEAVGVVAAQSIGEPGTQLTMRTFHSGGVAGVEDITGGFGRLMELIDAYDSPWGK
PAVIAAHYGTVTKIEPVYDLQNNPTSELSITLRYIDNNQTTFDDVIYVKRDRKLRVEEGD
QVAPGDKIVEGPIILNELLKVADTRAVQNYILKEVQKLYRLQGITISDKYIEIIIRQMLS
KILILDPGDSRFFSGSLVDILNYQKESARLIAQGKRPPFGEVKIKGAKQTPLLSDSFLSA
ASYQETPKILVNASISSQTDRLEGLKENIILGHKIPAGTNANFEDGGKYDIRDPRVYFKD
KYDSSLEPAKEELDLSLEEENFDMDDDSFNPLLGQSHGISRSGFESDDEENQGFSDFDPD
FDTDQVQDENQAPLSNLEKFTSQFDYAQEDETDDEESEYGGEVTYQDEVDDEY
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagtgaattaataataatcacacacacaaattactcgatgctccgatcaaacgg
attactttatctttagctaaccgcgaagatgtttcagcttgatcaatgggtgaagtcacc
aaacctgaaactattaattacaaaagttataaaccagaacgtgaaggtctttttgatgaa
ttaatctttggaccaactactgactacaagtgtccaacttgtggtactaagtacaaaaag
agcgacgaaaactcaacttgtacgaaaactccgatgtgtgaaaagttccaatcaaaaatc
ttgccaaaaatttcccgtcggagcagaatgggacacattagtctccagaacccggtagtg
cacttttgattctttaaaattgaccattcaattatttctaagttacttggtctcaaagtt
gctggtactaaccgtccagttgctaaagccgaccttgaaaaactcatctactacaaaagt
cacattatcctcgaagacggtggtcttaagtcacttaagaagaacaccatcatcgatatt
agtgaagcagctattatttaccaggaagctttactcgaattaagaaaccgttttgaccaa
agcaccgaagagtatgaactcatcaacgaatcacttgaagaactgcaagaatatgcaact
tcaaaagtcggaaaagactatggtatagacttctacgaatacaacgaagtaattcacgaa
tactcagaagctaaaattgacactggttcgcgtgccattgaatacttactcaaaaaagtg
gatttacaagccgaagctgcccaagtggaagaagaaattaaacggatcaataaccaaatt
gctcttaaccctgcttcaaccaaaattcaagaacgttcaaaactttacaaacgtttagca
gtactaaatgcctttattaattccggtcaaagtccacttgatatgttaatttacgactta
ccagtcattccagccgacttacgtccacttgtccaacttgatggtggtcgtcactcaact
agcgatatcaacgaactctaccgtcggatcatcattcggaacaaccgtttgcgtaagtga
gaagaaactgacgccccaatgctcattaaacaaaatgagtacagaatgattcaagaagcc
gttgactcgcttatcgataatgcgcggaaaaaaccaaacccagtctcatcaaaagacggc
cgtcctttgaagtcaatttcagatgcgctcaccggtaagaaaggacgtttccgtcaaaac
ttacttggtaaacgtgttgactactcaggtcgttcagttatcgtggttggcccagaactc
aaaatgcaccaagtgggaattccacgtgaaatggcggctgagttgttcgaaccttgaatc
atcaaagaattaatccaaggcgacaaccacatcaattcaattaaagctggtaaaaaagca
attgaaaaccttgatcctatcatttgaccttacgtggaaaaagccatccaaggtcgtcca
gtgcttttaaaccgggcaccaaccttgcaccggctttcaattcaagcctttgaaccagtg
ttaattcgtgggaaagcaatcaaattgcacccacttacctgtacgccattcaacgccgac
tttgacggtgaccaaatggctgtccacgtgcctatttctgacgaagcagttcgcgaagcg
cgtgaattaatgctggcttcgaaaaatattcttggtcctaaggacggtgaaccaatcatc
aaccctggccaagatattatcttaggactttactacctcaccaccgagcaagaaggcgta
gctggtgaaggccgttattttggtacttacgacgaacttatgactgcctacgagaacaac
caagtgcacttgcacgcgcgtgttgtgcttccactcgaagaaatcaataagtacttccac
ctttgaaactataaccgcaacaaccactatgtggtctcaactgttggtaaatttatcttt
aaccgtttgttcccagaaagctttgaattcttgtttggaaaatatgttgacccaatttca
ggcaaggaagtgcaacactcttcagctgattatgaacaagttaaccgttatttgttgcct
tatggtactgattttaaagcttatattagctcgctttcacttaatgcaccactaggtaaa
aaagacatttctaaaattgtgcgtaatgtttacaacagttatgtcgcaaccatcaatatg
gaatcacttgcgagtgtaattaatgacattaacgaaattttagctgacccgacttacgat
gcacacgatgtgcaaaataacttgttactccaacgtctccaaggactccaagactacaaa
cacgaaccattagcatgatcacatgcgatcatcttggaaaacattattcgaaaagaacac
aaagtcatttttgaccaaatcaaacggcaaatgcacttgagtcaaagcgaagatgaactt
ggcaaaactaaccacactcagcctttatgagaagtaaaacactatacagctttacttgac
aaagtgtgattccagtacactaacattgttgcttcaatcttagaccaacttaaagaaacc
ggttaccactattcaactatttctggtaccactattgccgttagtgacgtgcttactgat
ccaaataccaaaactaaaattcaagagggtgacaagtacatcgaagagctcaaatcattc
tttgaccaaggttttcttaccgacgacgaacgttactcactcacaattgaaaagtgaact
agaatcaaggaagacattgagagcgacctcaaaaaactcaccaaacaacacccacataac
ccattgttcatgatgttttcatcaggtgcccggggtacttcttctaacttcgtgcaattg
gccggaatgcgtggtttgatgaacaacaacaccaagattttaaaagccgatgccgaaaac
gaacgtgtcgtacgttcaacggtggaaattcccgtgaagtcatctttccttgatggtttg
actgcctatgaattctattcatcaacccacggggcgcggaaaggtttgaccgacatggcg
ctcaacacagccaagtctggttaccttactcgccgtttagttgacgtagcgcaaggaatt
gtagtcaaagaagacgactgtggtactgactatggttttgtagttgaagacattcgtgat
accaaaactaacactattatagaaagtttactcgaaagaatcgaaggtcgttttgctaac
aaaactatcactgatgctgctggtaatgttttagtgcacgctggtgaacttatcacacct
gagcttgccaacgatattgtcaacgctggcattgaacaagttgaaattcgttcagtactt
tcttgttatactcgtaatggtgtatgtaaaaaatgttatggtaaggacttagcacttaac
cgtgtagttaacatcggggaagcagttggtgtagtggcagcgcaatcaattggcgaacct
ggtacccagcttaccatgcgtactttccactctggtggggttgctggtgttgaagatatt
accggcggttttggtcgtttgatggaacttatcgacgcctatgattcgccttgaggtaaa
ccagcagttatcgccgcacactatggcacagtgacaaaaatcgaacctgtgtatgatctc
caaaacaatccaacttcagaattaagcattacgttgagatacattgacaataaccagaca
actttcgatgatgtaatttacgtcaaacgtgaccgtaagttacgggtggaagaaggtgac
caggtggcacctggcgacaaaattgtggaaggcccaattattcttaatgaacttctcaaa
gtcgctgatactcgcgctgtgcaaaattacattcttaaagaggtacaaaaactttatcgt
ttacaagggattaccattagcgataagtatattgaaatcattattcgtcaaatgctttca
aaaattctcattcttgacccaggcgactcacgcttcttctctggttcgttagtagacatt
ttgaattaccaaaaagaaagtgcacgtttaatcgcacaaggtaaacgtcctccttttggt
gaagtcaaaattaaaggtgctaaacaaacgcctttactttcagattctttcttgtctgca
gcttcttaccaagaaacaccaaaaattttggttaatgcctcaatttcaagtcaaactgac
cgtttagaaggtttgaaagaaaacattattttaggccacaaaattccagcaggtactaac
gcaaactttgaagacggcggtaaatacgatattcgtgacccacgtgtgtactttaaagat
aaatacgactcaagtcttgaacctgctaaagaagaacttgacctttcactggaagaagaa
aactttgatatggacgacgatagttttaacccgcttttaggtcaaagtcacggcatttca
cgaagtgggtttgaaagtgatgacgaagaaaaccaaggttttagcgactttgatcctgac
ttcgacactgaccaagtacaagacgaaaaccaagctccattgtcaaatctagaaaagttt
acttcacaatttgactacgcccaagaagatgaaactgacgacgaagaatccgaatacggc
ggcgaagttacttaccaagacgaagttgacgatgaatactaa
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integrated database retrieval system
