Mycoplasmopsis columbinasalis: NCTC10184_00184
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Entry
NCTC10184_00184 CDS
T07140
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mcob
Mycoplasmopsis columbinasalis
Pathway
mcob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10184_00184 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcob03021
]
NCTC10184_00184 (rpoB)
03400 DNA repair and recombination proteins [BR:
mcob03400
]
NCTC10184_00184 (rpoB)
Enzymes [BR:
mcob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10184_00184 (rpoB)
Transcription machinery [BR:
mcob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10184_00184 (rpoB)
DNA repair and recombination proteins [BR:
mcob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10184_00184 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5887
Motif
Other DBs
NCBI-ProteinID:
VEU77969
UniProt:
A0A449B9V2
LinkDB
All DBs
Position
1:complement(265787..269431)
Genome browser
AA seq
1214 aa
AA seq
DB search
MSLDAKQSNTNYKLRKFGPITERRDYSTTKQILNIPDFLSTSRESFEWFKSKGIEEVLRE
HYPIISANGKITLEYKENSARLEFPKAKEYDAIQDARVKGINYAAKLYAKYRITINDTSE
VKDDEVFLGEIPIMTSGGSFIINGSEKVIVSQLIRSPGAYFGRAVRNKQSDDLFNKLEIL
PRIGSWLEISHKITSKTVDTVKIKIDKNKNVSLTTFLVALGFTIESIYDLFGNSAELEET
IRRDKRIDEFPEDHLKNVKNCQEELFRVIRRGDRLTDESVANLISGILFNKKRYSLSQTG
RYMLNKKLNLVDRISETILAETLKIKDEDGSEKILEEGTFITHKLALLIQKNFDSGTLSA
KVIPGLDANVVYGKILNQSPKLEKMIKYISLNVYPSRKWKDRGKAPVKVIGNDPKSTETH
LIISDIVAAISYYFNLLTGIGQDDDPDSLTNKQIVAVGELLQNQLNVVLGKLEKTTRERM
GAKEANLITPKNITNNKLISNQMKTFFNSSKLSQFMDQINPLAEISNERRVTSLGPGGLN
RDTAQFEVRDVRATHYGRICPIETPEGPNIGLILNFATYAKVNEYGFLQTPYFKVVDGYV
HYDKVEYLTATEELGFYIAQSTVAVDENNKIVDPQITMRHNYTYVLGKPEEVDYIEAAPN
QMVSVAAGCIPFLENDDANRALMGSNMQRQAVPLLETEAPFVATGLESAIARFSSANITA
RQAGIVEYVDGAKIKVRDDKGKLETYTLKNFQRSNQDTVVHQRPLVKMGQRVEKGDLLVD
GSSFKDGELALGKNVVVAFTTFNGYNYEDAVILNERLVKDDVFTSIHIEEQTIQFRSSRV
GDDELTADIPNVSKWATRNLDERGIVKVGSEVLPGDVLVGRVSPKGDDNPTQEEKLLSAV
LNQRQMNVKDTSLKVKNGHNGTVIDVEVLDQKKDDVQFEDGIETIVKVSIAVKRKIRVGD
KMSGRHGNKGVVSIVLPEEDMPYLEDGTPVDVMLNPQGVPSRMNIGQVLEIHLGMAARSL
NIKFVTPAFDGIKKEEIFNLIREANLPESGKQYLINPITGRKFDNPVSVGVMYMLKLNHM
VDDKMHARSVGPYSLITQQPLGGKSQNGGQRFGEMETWALESYGATNVLQEILTYKSDDI
NGRNRLYAALAKGQPLPEPGVPESFNVLSYELKGLKMKLDLMHEAEQEVNYNAQGESDYQ
QYFENLEMQGGFNE
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagatgctaagcaatctaatacaaattacaaattacgcaaatttggcccaatc
accgaaagacgtgattattcaacaacaaaacaaattttaaacattcctgattttctttcg
accagcagagaatcttttgaatgatttaaatcaaagggaatcgaagaagttttacgtgaa
cattatccaattatttcagcaaatggcaagattacccttgagtataaagaaaatagtgct
cgtttggaattcccaaaagctaaagagtatgacgcaattcaagatgcgagagtaaaaggc
atcaactacgcagctaaactttatgctaaataccgtatcacaattaatgacacttcagaa
gttaaagacgatgaagtgtttttaggtgaaattccaattatgacttcaggcggaagtttt
attatcaatggaagcgaaaaagttattgttagccaattgattaggtcgcctggagcttat
tttggtcgtgccgttcgtaacaaacaatctgatgacttgttcaacaagcttgaaattttg
ccaagaattggttcgtgacttgaaatttcgcacaaaattacttcgaaaactgttgataca
gttaagatcaaaatcgataagaataaaaacgttagcttgacaacttttcttgtggcactt
ggttttaccattgaaagtatttacgacctttttggtaattcagctgaacttgaagaaact
attcgtagagacaaacggattgatgaatttccagaagatcacttaaaaaatgtgaagaac
tgtcaagaagagcttttcagagtgattcgtcgtggtgaccgtttaactgatgaatcagta
gctaacttaatttctggcattttgttcaacaaaaaacgctacagtttaagtcaaactgga
cgttatatgctcaacaaaaaacttaatttagttgaccggatttcagaaaccattttagct
gaaacactaaaaataaaagatgaagatggtagtgaaaaaatccttgaagaaggaactttt
attactcacaaattagctttattaattcaaaagaactttgatagtggcacattgtcagcg
aaagtaattccaggtttagacgctaatgttgtgtatggcaagattttaaaccaatcacca
aaattggaaaaaatgattaagtacattagtcttaatgtttatccaagtcgtaagtgaaaa
gatcgaggtaaagcaccagttaaagttattggtaacgatcctaaatcaactgaaacacac
ttaattatttcggacattgttgctgcgattagttattactttaaccttttaaccggaatt
ggtcaagacgacgatcctgactcacttaccaacaaacagattgtggctgttggcgaattg
ttacaaaaccaactcaacgttgtacttggtaaacttgaaaaaaccacacgtgaaagaatg
ggtgctaaggaagcaaacttaattacccctaaaaacattactaacaacaaactcatttct
aaccaaatgaaaactttctttaactcatcaaaactttcacaatttatggaccaaatcaac
cctcttgctgaaatttcaaacgaaagacgtgtgacctcacttggacctggtggtcttaac
cgtgatacagcgcaattcgaagtgcgggatgttcgcgccacccactacggtagaatttgt
ccaattgaaacccccgaaggaccaaacattggtttgattcttaattttgctacttatgct
aaagtgaacgagtacggttttctccaaactccttattttaaagtggtggatggctacgtg
cactatgacaaagtggaatatttaacagcgactgaagagttaggtttttacattgcgcaa
tcaaccgtggcagtagacgaaaacaacaaaattgttgatccacaaatcacgatgcgtcac
aactatacctatgttttaggaaaaccggaagaagtcgattacatcgaagctgcgcctaac
caaatggtttcagtagctgctggttgcattcctttccttgaaaacgacgatgcgaaccgt
gccttgatgggttcgaacatgcaacgtcaagctgtgccattgctagaaactgaagcgcct
tttgttgctactggtctagaaagtgccattgctcgtttttcttcagctaacattactgct
cgtcaagcgggaatcgttgaatacgttgacggcgccaaaattaaagttagagacgataag
ggcaaactagaaacttacacactgaagaatttccaacgttcaaaccaagacaccgtggta
caccaaaggccattagttaaaatgggacaacgtgtggaaaaaggcgacttgttagttgat
ggatcttcattcaaagatggtgaattagcgcttggtaaaaacgttgtggttgcctttacc
acatttaacggatacaactatgaggatgcggtcatcctcaacgaacgtcttgtgaaagat
gatgtctttacctcgattcacattgaagaacaaaccattcaatttagaagttcgagagta
ggtgacgatgagttaaccgctgacattccaaacgtgtcaaaatgagcaacgcggaacctt
gatgaacgtggcattgtcaaagttggttcggaagtgttgccaggcgatgtgttagttggt
cgcgtgtcgccaaaaggtgatgacaacccaactcaagaagaaaaacttctttctgcagtg
cttaaccaacggcaaatgaatgtaaaagacacttcactcaaagtcaaaaacggtcataat
ggtactgttattgatgtggaagtacttgaccagaagaaagatgatgtgcaatttgaagac
ggtattgaaactattgtcaaagtctcaattgctgtgaaacggaaaatacgtgttggtgac
aaaatgtctggtcgccacggaaacaaaggcgtggtttcaattgtgttaccagaagaagat
atgccttacttagaagatggtacaccagtagatgttatgctcaacccacaaggtgtgcct
tcgcggatgaacattggtcaagtcttagaaattcaccttggtatggccgctcgttcgtta
aacattaaatttgttacacctgctttcgatggtattaagaaggaagaaattttcaattta
attcgtgaagccaacttaccagaaagtggcaaacaataccttatcaacccaattactggt
cgtaagtttgacaacccagtttcagtaggtgtgatgtacatgcttaaacttaaccacatg
gttgacgacaagatgcacgcgcgttctgttggaccttattcactcattactcaacaacca
cttggtggtaagagtcaaaatggtggtcaaaggtttggagaaatggaaacctgagcgctt
gaaagttatggcgcaactaacgtactgcaagaaatcttgacttacaaatcagacgacatc
aatggtcggaacaggttgtatgctgccttagccaaagggcaaccactcccagaaccaggt
gtgcctgaatcattcaacgtgcttagttacgaactcaaaggtttgaagatgaaacttgac
ctaatgcacgaagctgaacaagaagttaattacaacgcccaaggcgagtcagactaccaa
caatactttgaaaacttagaaatgcaaggaggctttaatgagtaa
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integrated database retrieval system
