Mycoplasmopsis columbinasalis: NCTC10184_00210
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Entry
NCTC10184_00210 CDS
T07140
Name
(GenBank) hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mcob
Mycoplasmopsis columbinasalis
Pathway
mcob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10184_00210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcob03019
]
NCTC10184_00210
Messenger RNA biogenesis [BR:
mcob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10184_00210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
VEU77995
UniProt:
A0A449BA10
LinkDB
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Position
1:complement(290729..292588)
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AA seq
619 aa
AA seq
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MTPTRLIPIGGVQEIGKSTLLVEHENHIFIIDAGIKFADIATTGIRGIIPDYQYLLERYQ
NIEGLFITHGHEDHIGGVVYLLKQVPLKKIFAPRIAIQYFKAKFDEHKIDTKKIEFIEIE
KDSVFKFGNCTVDFWTAQHSIPDAFGIRITTPNGSLMCTGDFRFDYNPIGQYFTDFAKLD
QMGKEGLDILLSDSTNAMHPMHSPSESDILIDIEKYMRQATKKTIVTAFASNLTRVKVII
ELAAKLKKKVITFGRSMVQGVKIGRKLGYINVPNDVFVEKRDLPNVPSNKLVILTTGSQG
EQLAALSRMSYGKHATVRIEKGDMVIFSSSPIPGNRIVIELLVNRLAKLGAIIKENGVDG
YLHTSGHAYKHEHDKIFQLTRPKYFLPYHGEYRMCMVHGQSAVRNGVNPKNIIIPELGCV
YHLENHKVYKTNEKINFGPIYIDGFNTLNLNSSIVRERAKLGESGFVNVLIVIDRKNNDI
PGRSTIISRGSFFVKNSLKIVNEAKRIAHGAALYYVKNTPNWSLSELKQLITERLENFFY
KEKRRRPIIIPTIVFLNEDLDDEFANTKIQFSRGTNKNKENVNDEEAAEVYKMLKQVKSE
IFGSIDEISEDIHDEEDEE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacaccaacaagattgattccgattggtggtgtgcaggaaattggtaaatctactttg
ttggtagaacatgaaaatcatatttttatcattgacgccggaataaaatttgccgacatt
gccacaacaggaattcgtggcatcattcctgattaccaatatttacttgaaagataccaa
aacattgaaggtttgttcatcacccacggacacgaagaccacattgggggcgtggtgtac
ttgcttaaacaagtgccactcaaaaagatttttgcgcctcgaattgcaattcaatacttt
aaagcaaaatttgatgaacacaaaattgacactaaaaaaattgaatttattgaaattgaa
aaagattctgtgtttaaatttggcaattgtaccgtagacttttgaacagctcaacactca
attccggacgcttttggaattcgcattaccacaccaaatggttcgttaatgtgcactggt
gactttagatttgactataacccaattggacaatattttactgactttgccaaactcgac
caaatgggtaaagaaggtcttgacattttattaagtgattcgactaacgcaatgcaccca
atgcattcgccaagtgaaagtgacattctcattgatattgaaaaatatatgcgtcaagca
actaaaaagaccattgtcactgcgtttgcgtcaaatcttaccagggtaaaagttatcatt
gaattagcagctaaactcaagaaaaaagtaatcacctttggtcgttcgatggtgcaaggt
gttaaaatcgggcgtaaacttggctacatcaatgtgccaaatgatgtatttgtggaaaaa
agagatttaccaaatgtaccaagcaataaattagtcatcttaaccactggttcccaaggt
gaacaactagcggcgctttcaagaatgagttacggtaaacatgcaactgtgcggattgaa
aaaggtgatatggttatcttttcatcatcaccaattcctggtaacagaatagtgatcgag
ttattggtcaatcgtttagctaaattaggcgcaattattaaagaaaatggtgttgacggt
tacttgcatacatctgggcacgcttacaaacacgagcatgacaaaatttttcaactaacc
cgtccaaaatactttttaccttaccacggggaatatcgaatgtgtatggtgcacggtcaa
agcgctgtgcgtaatggcgtgaatccaaaaaatatcattattcctgaacttggttgtgtt
tatcatttagaaaatcacaaagtatataaaacaaacgaaaagattaatttcggcccaatt
tatattgatggttttaacactttaaacctaaattctagcatcgtacgtgaaagagcaaaa
cttggtgaatcgggttttgttaacgtcttaattgtaattgaccggaagaataacgatatt
ccaggacgttcaacaattattagtcgtggcagtttctttgttaaaaattcattaaaaatt
gttaacgaagctaaaagaatcgcccacggtgcagcactttattacgttaaaaatacacca
aattggtctttaagtgaattaaaacaattaattactgagcgtttagaaaactttttctat
aaagaaaaacgccgtagaccaataattattccgactattgtgtttctaaatgaagattta
gatgatgaatttgctaacaccaaaattcaatttagtcgtggcactaataaaaacaaagaa
aatgtcaacgacgaagaagctgcagaagtttacaaaatgctcaaacaagttaaaagcgaa
atttttggttctattgacgaaatttctgaagatattcacgacgaagaagatgaagaatag
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