Mycoplasmopsis columbinasalis: NCTC10184_00346
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Entry
NCTC10184_00346 CDS
T07140
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V C-terminal fragment
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mcob
Mycoplasmopsis columbinasalis
Pathway
mcob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC10184_00346 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcob03400
]
NCTC10184_00346 (recD)
Enzymes [BR:
mcob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC10184_00346 (recD)
DNA repair and recombination proteins [BR:
mcob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC10184_00346 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
AAA_11
PIF1
UvrD-helicase
AAA_22
SH3_13
AAA_12
AAA
SLFN-g3_helicase
NPHP3_N
Helicase_RecD
AAA_16
nSTAND3
RNA_helicase
NACHT
cobW
AAA_14
AAA_18
Motif
Other DBs
NCBI-ProteinID:
VEU78123
UniProt:
A0A449BA96
LinkDB
All DBs
Position
1:424249..426384
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AA seq
711 aa
AA seq
DB search
MTEQELKVTGRFTKIFKGGPDFNWAYTLALFSTKKQTYLVYMNKEVFEIGNYYDLVLRKN
ENYDSYVLVQISQPQLTTEMINELVIEKVQGFTKKSLEKIIEKYGEEWYKVAEKHNYFEK
DLVIKTPSRKKSLKEFLSTFENETYKFFLRQHLIIYYENLKEFFKKSDFLLELTQLNVYK
FYFELGWHFYDVHRFALALYKPDENIIQRTWMTKSLILKYFEEQYTSNSTFFKYEPYKIF
QKIKREWPGARVEYVTDILDVMLETKELIYFDALDRICTAEMYKKNLYILQKVFLLKSNK
TLPLIYNKKSSIKWSEKQQKAYLEALQSGFYIISGFPGTGKSYLIEHIYKSFIESNVYKK
DSVAILAPTGKATANIRTKTKVTAQTIHSYFKIDHEFAKNFDSIPESDKTRVLIIDEFSM
VNVDLFYTILLKCPNLERLILVGDSNQLPCIGPGNLLEEFMEAKDIDKIYLTEIFRTEFK
DISDNFVAVQGKNYPIMQSEHIFFHETNLATFYENFPLMYEKLREIYEIDDIAILIPTNE
IINQTNKIIQQYRLEKHETQDIGIAKIHKNEKLYIGDKIICVINKPSENIVNGETGEFIG
IDGGNYVFSINNGEKILKLNQKTTTETIKLAYATTVHKFQGSESKVVVFCAFAEVEYMLT
NRLIYTAVSRAQEKLIILGSEHHYLSGIRNSDEHIETIMSYLLNTRQEKWN
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaagagttaaaagtgacaggaagattcacaaaaatttttaaaggcggtcct
gattttaattgggcgtacacgcttgcattgttttcaacaaaaaaacaaacttatttggtt
tatatgaataaagaagtttttgaaatcggaaactattatgaccttgtgttacgcaaaaat
gaaaattatgactcatacgttcttgttcaaatttcgcaaccacaacttacaaccgaaatg
attaatgaactcgtaatcgaaaaagttcaaggttttactaaaaagtcgcttgaaaaaatt
attgaaaaatatggtgaagaatgatacaaagtggctgagaaacacaattattttgaaaaa
gatttagtgataaaaactccaagcagaaagaaaagtctcaaagaatttttatcaactttc
gaaaatgaaacctataaattttttctcagacagcatttgataatttattacgaaaattta
aaagaattctttaaaaaaagcgattttttattagagttgactcaattaaacgtttataaa
ttttattttgaattaggttggcatttttatgatgtacaccgttttgccttagctttatac
aagcctgacgaaaatataattcaacgaacttgaatgacaaaaagtttgattctaaaatat
tttgaagaacaatacacatcaaacagtacattttttaaatatgaaccatataagattttt
caaaaaattaaaagagaatggccaggcgctagagttgaatatgtgaccgatattttagat
gtgatgttagaaacaaaggaattaatttattttgatgctttagatagaatatgcacagca
gaaatgtataaaaaaaatctgtatattttgcaaaaagtttttttattaaaatctaacaaa
acattaccacttatttataataaaaaatcatcaatcaaatggtctgagaaacagcagaaa
gcttatttagaagctttgcaaagcgggttttacattatttctggttttccaggaacaggc
aaatcatatttaattgaacacatttacaagagttttatcgaatcaaatgtttataaaaaa
gattcggtggcaattctagccccaacaggaaaagcaactgcgaatataagaacaaaaaca
aaagtgacagcacaaacgattcatagttacttcaaaattgaccacgaatttgccaaaaac
tttgattccatacctgagtctgataaaacaagagttttaattattgatgagttttcaatg
gtgaatgttgatttgttctatactattttgttgaagtgtcctaacttagaacgtttaatt
ttggttggtgatagtaatcagcttccttgcattggaccaggtaatttgctggaagaattt
atggaagcaaaagacattgacaaaatctacttaacagaaatttttcgtacggaattcaag
gatataagcgataactttgtagctgtgcaaggaaaaaattacccaattatgcaatctgaa
catatattttttcacgaaacaaatctagctactttttatgaaaatttcccattaatgtat
gaaaagttaagagaaatttacgagattgatgatattgcgattttaattcctactaatgaa
atcattaatcaaacaaacaaaatcattcaacagtaccgtttagaaaagcacgaaacacaa
gatattggtattgctaaaattcacaaaaacgagaaattgtatataggcgacaaaattatt
tgtgtgattaacaaaccatcagaaaatatagttaacggagaaactggtgaatttatcgga
attgatggtggaaattacgttttttcaatcaataatggcgaaaaaattctgaaactaaat
caaaaaacaacaaccgaaacaataaaattagcatacgctaccaccgtacataaatttcaa
gggtcagaatcaaaagtagttgttttttgtgcgtttgctgaagtggaatatatgttaact
aatcgtttgatttataccgctgtttcgcgagctcaagaaaaacttataattctaggtagt
gaacatcactatttaagtggcattcgtaactctgatgaacacatcgagactataatgagt
tatttattaaacacaaggcaggaaaaatgaaattaa
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