Mastomys coucha (southern multimammate mouse): 116067979
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Entry
116067979 CDS
T07224
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04613
Neutrophil extracellular trap formation
mcoc05014
Amyotrophic lateral sclerosis
mcoc05034
Alcoholism
mcoc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
116067979 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
116067979 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116067979 (Hdac6)
09165 Substance dependence
05034 Alcoholism
116067979 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcoc01009
]
116067979 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116067979 (Hdac6)
04131 Membrane trafficking [BR:
mcoc04131
]
116067979 (Hdac6)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116067979 (Hdac6)
Enzymes [BR:
mcoc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116067979 (Hdac6)
Protein phosphatases and associated proteins [BR:
mcoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116067979 (Hdac6)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116067979 (Hdac6)
Membrane trafficking [BR:
mcoc04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116067979 (Hdac6)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
116067979 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
116067979
NCBI-ProteinID:
XP_031192899
LinkDB
All DBs
Position
X
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AA seq
1152 aa
AA seq
DB search
MTSTGQDSSTRQRKSRHNPQSPLQDSSATLKRGGKKCAVPYSSPNLAEVKKKGKMKKLSQ
PAEEDLIVGLHGLDLNPDTRVPVGTGLVFDEQLNDFHCLWDDSFPENPERLHAIKEQLIL
EGLLGRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLAGTYDSVYLHPNSY
SCACLATGSVLRLVDAVIGAEIRNGMAVIRPPGHHAQRSLMDGYCMFNHLAVAARYAQKK
HRIQRILIVDWDVHHGQGTQFIFDQDPSVLYFSIHRYEHGRFWPHLKASNWSSIGFGQGQ
GYTVNVPWNQVGMRDADYIAAFLHILLPIAFEFQPQLVLVAAGFDALHGDPKGEMSATPA
GFAHLTHLLMGLAGGKLILSLEGGYNLHALAKGVSASLHTLLGDPCPMLESPVAPCASAQ
TSISCTLEALEPLWEVLERSVESHEEGEVEEDMLEEEEEEGHWEAAALPMDTWPLLQNRT
GLVYDERMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPVLDAELLTCHS
AEYVERLRATEKMKTRDLHREGANFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNG
IAIVRPPGHHAEPDAACGFCFFNSVAVAARHAQVIAGRALRILIVDWDIHHGNGTQHIFE
DDSSVLYVSLHRYDRGTFFPMGDEGASSQVGRAAGTGFTVNVPWNGPRMGDADYLAAWHR
LILPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGRIILVLEGG
YNLASISESMAACTHSLLGDPPPQLTLLRPPQSGALASISEVIQVHRKYWRSLRLMKMED
KEECSGSRLVIKKLPPTSSPVSAKGMTTPKGKVPEASMRKTIAAIAALPAKESTVGQAKS
KTAKAVLAQGQASEQVAKGTTEDLATSKESVGGSTTDQYASAAATENLPNQTTSEKAVGE
TEPTSPASYANKQTTGASPLQGVTAQQSLELGVLGTLELSSEAEEAHESEEGLLGEAAGG
QDMNSLMLTQGFGDFNTQDVFYAVTPLSWCPHLMAVCPIPAAGINVFQPCKTCGAFQENW
VCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYLCQAYVHHEDLQDVKNAAH
QNKFGEDMPHLQ
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaagattcttctaccaggcagcgaaagagtaggcacaatccccaa
tcgccccttcaggactccagcgccaccttgaagcgtggtggtaagaagtgtgctgtaccc
tactccagccccaatctagcggaggtaaagaagaaaggcaaaatgaagaagctcagccaa
ccagctgaagaagacctaatcgtggggcttcatgggctggatctgaaccctgacacaaga
gtaccagttggtactggattggtgtttgatgagcaactaaatgacttccactgcctttgg
gatgacagcttccctgaaaaccctgagcggctccatgccatcaaagagcagctgatcctg
gagggcctcctgggccgctgtgtgtcctttcaggcccgtttcgctgagaaggaggagctg
atgttggttcacagcttggaatacattgatctgatggagacaacccagtacatgaatgaa
ggagaacttcgagtactagcaggcacctatgattcagtttatctgcatccgaactcatat
tcatgtgcctgcctggctacaggctctgttctcaggctggtagatgcagtcataggggct
gagattcggaatggcatggccgtcatcaggcctcctggacaccatgctcagcgcagtctt
atggatgggtattgcatgttcaaccatctggctgtggctgcccgctatgcgcaaaagaag
caccgcatacagaggattctcatcgtggactgggatgtgcaccatggtcaaggaacacag
ttcatcttcgaccaggaccccagtgtcctctacttctccatccaccggtatgagcatggt
cggttctggccccaccttaaagcctctaactggtccagtataggttttggccaaggccaa
ggatataccgtcaatgtaccttggaaccaggtggggatgcgggatgctgactacattgct
gctttcctgcacatcctgctgccaattgcctttgagtttcagcctcaactggtcctggtg
gccgctggatttgatgccctccatggggaccccaagggagagatgtctgctactccagca
ggatttgcccacctaacccatttgctcatgggtttggcaggaggcaagttgattctgtct
ctggagggtggctataacctccatgccctggctaagggtgtcagtgcttcactccatacc
cttcttggagacccttgccccatgttggagtcccctgttgcaccttgtgcaagtgcccag
acttccatctcctgcactctagaagcccttgaacccttgtgggaggttcttgagagatca
gttgagtcccatgaggaaggtgaagtggaagaagacatgctagaagaggaagaggaggaa
ggccactgggaggccgctgcactgccaatggacacatggccactgctccagaaccgcact
gggctggtctatgatgaaagaatgatgagtcactgcaacctatgggacaatcatcaccct
gagacacctcagcgcatcttacgaatcatgtgtcacctggaggaggtgggccttgcagca
cgctgtctcatcctacctgcacgacctgtcctggatgctgagctccttacctgtcacagt
gctgagtacgtggagcgtctccgggccacagaaaagatgaaaacccgggacctgcaccgt
gaaggtgccaactttgactccatctacatctgccccagcacctttgcctgcgcacagctt
gccactggcgctgcctgccgcctggtggaagctgtgctttcaggagaggttttgaatggc
attgcaatagtgcgccctccaggacaccacgctgagccggatgctgcttgtggcttctgc
tttttcaattccgtagctgtggctgctcgccatgcccaggtcattgctggacgtgccctg
cggatcctaattgtggattgggatattcatcatggtaatggaactcagcacatatttgag
gatgactccagtgtattatatgtgtccctgcaccggtatgaccgtggtactttcttcccc
atgggggatgagggtgccagtagccaagtaggccgagctgcaggtacaggcttcactgtc
aatgtaccctggaatgggccccgcatgggcgatgccgattacctggccgcgtggcatcgt
ctgatacttcccatcgcctatgagtttaacccagaactggtgctgatttcagctggcttt
gatgctgcacaaggggacccgcttgggggctgccaagtgacacctgagggttatgcccac
cttacccacctgctgatgggccttgctggtggccgtattattcttgttctagagggtgga
tacaatttggcatccatctctgaatctatggctgcctgcacccattccctgcttggagac
ccaccaccccagcttactttgctgcgacctccacagtcaggagccctggcttcaatcagt
gaggtcatccaagtccatcgcaaatactggcgcagtttgcggctgatgaaaatggaagac
aaggaagaatgctctggttctaggcttgtcatcaagaagctgcccccaacgtccagtcct
gtgtcagctaagggaatgaccacaccaaaaggaaaggttcccgaagcaagcatgaggaag
accatagcagcaatagcagcattaccggcaaaagagtctactgtaggccaggctaaatca
aagacagcgaaggcagtgcttgctcagggccaggcctcagaacaagttgctaagggaact
acagaagacctggctacctcaaaggagtctgtgggaggatccacaacggaccagtatgcc
tcagcagcagctactgaaaacttacctaaccagaccacctccgagaaggctgtgggagaa
actgagccaacttccccagcctcatatgcaaacaagcagaccacaggagcttcacctctg
cagggagtcacagcccagcagtcccttgagcttggggttctcggcactttagagctaagc
agtgaagcagaggaagcgcatgaatccgaggagggcttgttaggagaagcagctggaggt
caggatatgaacagcttgatgctgacacaaggatttggggactttaatacccaggatgta
ttttatgctgtgaccccactatcctggtgtccccatttgatggcagtatgccccattcct
gcagcaggcataaatgtattccaaccttgtaagacttgtggagcattccaggagaattgg
gtgtgtctgacttgctatcaggtgtactgcagtcgctatgtcaatgcccatatggtctgc
caccatgaagcctctgaacacccgctggtcctcagctgtgttgacctatctacatggtgt
tatctctgtcaggcttacgtccaccacgaggatctccaagatgtgaagaatgctgcccac
cagaacaagtttggggaggacatgccccacttacaataa
DBGET
integrated database retrieval system
