Mastomys coucha (southern multimammate mouse): 116068348
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Entry
116068348 CDS
T07224
Symbol
Atxn2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc05014
Amyotrophic lateral sclerosis
mcoc05017
Spinocerebellar ataxia
mcoc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116068348 (Atxn2)
05017 Spinocerebellar ataxia
116068348 (Atxn2)
05022 Pathways of neurodegeneration - multiple diseases
116068348 (Atxn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116068348 (Atxn2)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116068348 (Atxn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
116068348
NCBI-ProteinID:
XP_031193584
LinkDB
All DBs
Position
Unknown
AA seq
1288 aa
AA seq
DB search
MRPSAAAAQRPAAGPEPRRPWGWAARRSRSRSLPRTARRGGRGGAAAYPSAGPPPRGPGA
PPRGPRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATAPAHVRPLG
VRASPPRSGVSSALPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGA
APASAASTSSSVVPAPAAPVASSSAAAGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRM
VHILTSVVGSKCEVQVKSGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESV
LFKCSDFVVVQFKDTDSSYARRDAFTDSALSAKVNGEHKEKDLEPWDAGELTASEELEAL
ENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEI
ESSAQYKARVALENDDRSEEEKYTAVQRNFSDREGHGTNTRENKYIPPGQRNREVLSWGS
GRQSSPRMGQPGPGTGPSRAASHTSDFNPNAGSDQRVVNGGVPWPSPCPSPSSRPPSRYQ
SGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQ
RHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTH
RPRSPRQNSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTPASPASNRALTPSMEAKD
SRLQDQRQNSPAGNKENIKASETSPSFSKAENKGMSPVVSEHRKQIDDLKKFKNDFRLQP
SSTSESMDQLLNKNREGEKSRDLIKDKTEASAKDGFIDSSSSSNCTSGSSKANSPSISPS
VLNNAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFS
QPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMT
PMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQ
FPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMY
ACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHAGSH
PAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTV
FTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSA
LQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgtcggccgccgccgctcagcggcccgcggcgggccccgagccgcgccgcccg
tggggctgggccgcgcggcgctcgcgttcgcgctcgctcccgcggacggcgcggcgcggc
gggcggggcggcgcggcggcatatccctccgccggccctcccccgcgcggccccggcgcc
cctccccgcgggccgcgctcgccgccctgcgcctcagactgttttggtagcaacggcaac
ggcgcgtcccggcccggctcccggcggctgttcggtgtctgcgggcctccccgccccttc
gtcgtcgtcctgctgcctctggcacccgcgaccgcgccggcccacgttcgcccgctcggc
gttcgcgcgtccccgccgcgctccggcgtctcctcagcgctcccggctcccggctgtccc
cgcccggcgtgcgagccggtgtatgggccgctcaccatgtcgctgaagccgcagccgcag
ccgcccgcgcccgccagtggccgcaagcctggcggcggcctgctttcctcgcccggcgcc
gcgccggcctcggccgcctcgacctcgtcttccgtggtgcctgccccggccgcgccggtg
gcgtcttcctcggcggccgcgggcggcgggcgtcccggcctgggcagaggtcggaacagt
agcaaaggactgcctcagcctacgatttcttttgatggaatctatgcaaacgtgaggatg
gttcatatacttacatcagttgttggatcgaaatgtgaagtacaagtgaaaagcggaggc
atatatgaaggagtttttaaaacatacagtcctaagtgtgatttggtacttgatgctgca
catgagaaaagtacagaatccagttcggggccaaaacgtgaagaaataatggagagtgtt
ttgtttaaatgctcagacttcgttgtggtacagtttaaagatacagactccagttatgca
cggagagatgcttttactgactctgctctcagtgctaaggtgaatggcgagcacaaggag
aaggatttggagccctgggatgcaggggagctcacagccagcgaggagctggaggctctg
gagaatgatgtgtctaatggatgggaccccaatgatatgtttcgatataatgaagagaat
tacggtgtggtgtccacatacgatagcagtttatcttcatatacggttcccttagaaagg
gacaactcagaagaatttctaaaacgggaggcaagggcaaaccagttagcagaagaaatt
gaatcgagtgctcaatacaaagctcgtgtggcccttgagaatgatgaccggagtgaggaa
gaaaaatacacagcagtccagagaaacttcagtgaccgggaggggcatggcaccaacact
agggaaaataaatatattcctcctggacaaagaaacagagaagtcctatcctggggaagt
gggagacagagctcaccacggatgggccagcctggaccaggcactgggccatcaagagct
gcttctcacacttcagatttcaacccaaatgctggctcagaccaaagagtagttaatgga
ggtgttccctggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccag
tcaggtcccaactctcttccacctcgggcagccacccctacacggccgccctccaggccc
ccctcgaggccctccagacccccgtctcacccctctgctcatggttctccagctcctgtc
tctactatgcctaaacgcatgtcttcagaaggccctccaaggatgtctccaaaggcacag
cggcaccctcggaatcacagagtctctgctgggagaggctccatgtctagtggcctagaa
tttgtttcccataatcccccaagtgaagcagctgctcctccagtggcaaggaccagtcct
gcagggggaacctggtcctcggtggtcagtggggttccaaggttatctcccaaaactcac
agacccaggtctcccaggcagaatagcattggaaactctcccagcgggcctgtgcttgct
tctccccaagctggcatcatccctgctgaagctgtttccatgcctgttcctgccgcatct
ccgactcctgccagccctgcgtccaacagagcactgaccccatctatggaggcaaaagat
tccaggcttcaagatcagaggcagaactctcctgcagggaataaagaaaatattaaagca
agtgaaacatcacctagcttttcaaaagctgaaaacaaaggtatgtcaccagttgtttct
gaacatagaaaacagattgatgatttaaagaagtttaagaatgattttaggttacagcca
agttctacatctgaatctatggatcaacttctaaacaaaaatagagaaggagaaaagtca
agagatttgatcaaagataaaacagaagcaagtgctaaggatggtttcattgacagcagc
agcagcagcaactgcaccagtggcagcagcaaggccaacagccctagcatctccccttct
gtgcttaataatgcagagcacaaaagagggcctgaggtcacgtcccaaggagtgcagact
tccagtccagcctgcaaacaagagaaggatgacagagaggagaagaaggacacaaccgag
caagttaggaagtcgacattgaatcccaatgcaaaggagttcaatcctcgttctttctct
cagccaaagccttctactaccccaacgtcgcctcggcctcaagcacaacccagcccatcc
atggtgggtcatcagcagccagctccagtgtacactcagcctgtgtgttttgcacccaat
atgatgtatcctgtcccagtgagcccgggcgtgcaacctttatacccaatacctatgacg
cccatgccagtgaaccaagccaagacatatagagcaggtaaagtaccaaatatgccccaa
cagcgacaagaccagcatcatcaaagcaccatgatgcaccctgcctccgcggcaggacca
cccattgtagccaccccgcccgcttactccactcagtacgttgcctacagccctcagcag
tttcccaatcagcctttggtccagcatgtgccacattatcagtctcagcatcctcatgtg
tacagtcctgtcatacaaggtaatgccaggatgatggcaccaccagctcatgctcagcct
ggcttagtgtcttcttcagccgctcagttcggggctcacgagcagacgcacgccatgtat
gcatgtcccaaattaccatacaacaaggagacaagcccttctttctactttgccatttcc
accggctcccttgctcagcagtacgcacatcctaatgccactctgcatccacacactccc
caccctcagccttcggccactcccaccggacagcaacaaagccagcatgctggaagtcat
cctgcacccagtcccgttcagcaccatcagcaccaggctgcccaggctcttcatctggcc
agtccacagcagcagtcggccatttatcatgcggggctggcaccaacaccaccttccatg
actcctgcctctaatacacagtctccacagagcagcttcccagcagcacaacagacagtc
ttcaccatccatccttctcatgttcagccagcatacaccaccccaccccacatggcccac
gtacctcaggctcatgtacagtcaggaatggttccttctcatccaactgcccatgcgcca
atgatgctaatgacgacacagccacccggcggtccccaggccgccctcgctcaaagtgca
ctacaacccattccagtctcgacaacagcgcatttcccttatatgacgcacccttcagta
caagcccaccaccaacagcagttgtaa
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integrated database retrieval system
