Mastomys coucha (southern multimammate mouse): 116068578
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Entry
116068578 CDS
T07224
Symbol
Trim56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcoc04121
]
116068578 (Trim56)
Enzymes [BR:
mcoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116068578 (Trim56)
Ubiquitin system [BR:
mcoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116068578 (Trim56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-C3HC4_4
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
116068578
NCBI-ProteinID:
XP_031194165
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MNSKVSSPTLLEALSSDFLACKICLEQLNTPKTLPCLHTYCQDCLAQLDIGGQVRCPECR
EIVPVPREGVAAFKTNFFVNGLLDLVKARAPGDVHSGKPTCALCPLVGGKSSGGPATARC
LDCADDLCQACADGHRCSRQTHKHRVVDLVGYRAGWYDEEARQRQASQCPQHPGEALCFL
CQPCSQLLCKDCRLGPHIDHPCLPLAEAVRSRKPGLEELLAGVDSNLVELEATRVAEKEA
LASLREQAASVGMQVEEAAERILKSLLAQKQEVLGQLRALMEAAEEATRERLAKIEGQEQ
VAKAAAAFARRVLSLGLEAEILSLEGAITQRLRQLQDSPWTSGPTRCVLPQLELHPGLED
KNCHLLRLSFEEPKQSQKDNGKGGAGTQGRDEAQGQGEDRTKTAKQGGAQPLTPKEGKAQ
IPQEDDEVLIERGNRLNKKKKCRGRGKSVSREPSPILRPNLEGSGLLPRPVFSWSFPTRM
PGDKRSPRITGLCPYGPQEILVADEQNRVLKRFSLNGDYKGTVAVAEGCSPCSVAALQNT
VAFSANARLYLVNPDGEVQWRRSLSLTQSSHAVAAMPCGDRVAVSVAGHVEVYKKDGSLA
TRFIPGGKASRGQRALVFLTTCPQGNFVGSDWQQNSVVFCDGLGQVIWEYKGPGLHGCQP
GSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGKYLVVSLS
NGTIHVFRVRFPDS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaactccaaagtctcttccccaaccctgctggaagctctgagcagcgatttcctagcc
tgtaaaatctgcctggagcagttaaacacacccaagactctgccatgcctacatacctat
tgccaggattgtctggcccagctggacatcggtggccaggtccgctgccctgagtgccgg
gagattgtgcctgtcccccgcgaaggggtggccgccttcaagaccaacttctttgtcaat
gggctcttggatcttgtgaaggccagagctcctggagacgtgcattcagggaagccaacc
tgcgctctgtgccctctggtgggaggcaagagctcagggggacccgccacagccaggtgc
ctggactgtgcagatgacttgtgccaggcctgtgccgatgggcatcgctgctcccgccag
acccataaacaccgcgtcgttgacttggtgggttatagagccgggtggtatgatgaagag
gctcgccagcgccaggcatcccagtgtccccagcacccaggggaagccctctgcttcctc
tgccagccttgttctcagttgctctgcaaagattgccgcctgggtccccatatcgatcac
ccctgcttgcccttagcggaagcagtgcgttccaggaagccgggccttgaggagttattg
gcaggtgtggacagcaatctggtggagctagaggccactcgggtggcagaaaaggaagcc
ctggcctcgcttcgggagcaggcagccagtgtggggatgcaggtggaggaggcagctgaa
cgtatcctcaagtccctgctggcccagaagcaggaagtgttgggacagctccgggccctc
atggaggctgccgaggaggctaccagagagaggctggccaagatagagggccaggagcag
gtggccaaggcggctgccgcgtttgcccgtcgagtgctcagcctgggcctagaggccgag
atcctttctctggagggagcaatcacacagcgcctgcgccagcttcaagactctccctgg
acttctgggcccacccgctgtgtgctgccccaactggagctccaccctgggcttgaagac
aagaactgccacctgctccgactctccttcgaggagccaaaacaatcccagaaggacaat
ggaaagggtggagctggtacccaaggaagagacgaagctcaaggccaaggggaagataga
accaagacagcgaagcagggcggagcccagcccctgactcccaaagaaggcaaagcccag
atcccccaagaagacgacgaggtcctcatcgaaaggggtaacaggcttaacaagaagaaa
aagtgcagaggcaggggcaagtccgtttctcgggagcccagccccatcctgaggccaaac
ttagaaggttcaggcctcctccctcggcctgtcttttcctggagtttccccacgaggatg
cccggggacaagcgctccccacggatcactggactctgtccctacggcccccaggaaatc
ttggtggcagatgagcagaatagggtcttgaaacgcttctccctcaatggggactacaaa
ggcacagtggcggtcgctgagggctgttccccgtgcagcgtggctgccctgcagaacaca
gtggctttctccgccaatgcaagactctatcttgtcaatcctgatggagaagttcagtgg
cgcaggtccctgagcctcacccagtccagccacgctgtggccgcaatgccgtgtggagac
cgggtagccgtcagtgtggcaggccatgtggaagtatataagaaagacggcagcctggct
actcggtttatccccggaggcaaggctagccggggccagcgggcactggtgttcctgacc
acctgcccccagggcaattttgtagggtcagattggcagcagaatagcgtggttttctgt
gatgggctaggtcaagtgatctgggaatacaagggccctgggttacatggctgccagcca
ggttctgtgtctgtggataagaagggctacatatttctgacccttcgagaggtgaacaag
gtggtgatcctggatcccaaggggtcgcttcttggtgacttcctcacagcataccatggc
ctggaaaagcctcgggtaaccaccatggtagatggcaaatacttggtggtgtcacttagt
aatgggaccatccatgtctttagggtcaggtttcctgacagttaa
DBGET
integrated database retrieval system
