Mastomys coucha (southern multimammate mouse): 116068833
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Entry
116068833 CDS
T07224
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116068833 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116068833 (Xab2)
03041 Spliceosome [BR:
mcoc03041
]
116068833 (Xab2)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116068833 (Xab2)
Spliceosome [BR:
mcoc03041
]
Complex B
Other components
Prp19-related factors
116068833 (Xab2)
Complex C
116068833 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
TPR_8
Suf
TPR_19
TPR_15
TPR_MalT
ARM_TT21
ARM_TT21_C
TPR_1
TPR_21
TPR_16
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
116068833
NCBI-ProteinID:
XP_031194760
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEENGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEEEDEEEMDLEPNEVQLE
QQTVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgagttccccgtcccgagcggccggatcttgtttttgaggaagag
gaccttccctatgaggaagaaatcatgaggaaccagttctctgtcaaatgctggctccgc
tacatcgagttcaaacagggggctcccaaaccccgactcaaccagctgtacgagcgggcg
ctcaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggcg
caggtgaaacatcggtgtgtgactgaccctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacgcctgtggttagactactgccagtttctc
atggatcagggaagagtaacacatacccgccgcacctttgaccgtgccctcagggcactg
cccatcacacagcactcccgcatctggcccctgtatctgcgtttcctgcgctcccaccca
ctgcctgagactgctgtgcgaggctaccgtcgcttcctcaagctaagccctgagagtgct
gaggaatacatcgagtatctcaaatccagtgaccggctagacgaggctgcacaacgcctg
gccactgtggtgaatgatgagcgctttgtatccaaggctggtaaatccaactaccagctg
tggcacgagctgtgtgaccttatctcccagaatccagacaaggtacagtctctcaatgtg
gatgccataatccgtggtgggctcacccgcttcactgaccagctgggcaagctgtggtgc
tccctggcagactactatatccgcagtggccacttcgaaaaggcccgggatgtatatgag
gaggccatccgcactgtgatgactgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagcgaagatggagactgcctctgaactggggcgtgag
gaggaagatgatgtggacctggagctgcgcctggcccgcttcgagcagctcattagccga
cggcccctgcttctcaatagcgtccttctgcgccagaacccacaccatgtccacgaatgg
cacaagcgtgtagccctgcatcagggccgccctcgggagattatcaacacatacacagag
gctgtgcagacagtagaccccttcaaagccacaggcaagccgcacacattgtgggttgca
tttgccaagttttatgaagaaaatggacagctggatgatgctcgtgtcatcctagagaag
gccaccaaggtgaacttcaagcaggtggatgacctggcgagtgtgtggtgccagtgtggg
gagctggagctccggcatgagaattatgatgaggccttaaagctgcttcggaaagctacg
gctttgcctgcccgtcgggctgagtactttgatggttcagagcctgtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgccgacttggaggaaagcctgggcactttc
cagtcgaccaaggccgtgtatgaccgaatcctggacctgcgcatagccacaccacagatt
gtcataaactatgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgtggcatctcactgttcaagtggcccaatgtttcagacatctggagcacctac
ctgaccaaattcatctcgcgctatgggggccgcaagctggagcgtgcacgggatctcttt
gagcaggcactagatggctgcccaccaaaatatgccaagactttatatctgctttacgca
cagctagaggaggagtggggccttgcccgccatgccatggctgtgtatgatcgtgctacc
agggcagtggagccagcccagcagtatgatatgtttaacatctacatcaagcgggctgct
gagatctatggcgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtct
gatgagcatgcccgtgagatgtgcctgcgctttgcagacatggagtgcaagcttggtgag
atcgaccgcgcccgggccatctacagcttctgctctcagatctgtgatccccggacaact
ggggcattctggcaaacatggaaggactttgaggtccggcacggcaatgaggataccatc
agggagatgctgaggatacggcggagtgtgcaggccacatacaatactcaggtcaacttc
atggcttcacagatgctcaaggtgtcgggcagtgccacaggaaccgtgtctgacctggct
cctgggcagagcggcatggatgacatgaagttgctggaacagagagcagaacagctagca
gctgaggcagagcgggaccagccccccagggcccagagcaagatcttcttcgtgaggagt
gatgcatccagggaggaattggcagagctggctcagcaggccaaccctgaggagatccag
ctgggcgaggaggaggacgaggaggagatggacctggagcccaacgaagtccaactggaa
cagcagactgtgccagctgctgtgttcgggagcctaaaggaagactga
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