KEGG   Mastomys coucha (southern multimammate mouse): 116068944
Entry
116068944         CDS       T07224                                 
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
  KO
K14328  regulator of nonsense transcripts 3
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013  Nucleocytoplasmic transport
mcoc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    116068944 (Upf3a)
   03015 mRNA surveillance pathway
    116068944 (Upf3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcoc03019]
    116068944 (Upf3a)
Messenger RNA biogenesis [BR:mcoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     116068944 (Upf3a)
   mRNA cycle factors
    P-body specific factors
     116068944 (Upf3a)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 116068944
NCBI-ProteinID: XP_031195004
LinkDB
Position
Unknown
AA seq 422 aa
MRSEEGAGGSGAVLSARGPSWREKLSSSDIHFRRDSQRNESAAPPAPISSESGAGKPREE
KRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSLCPHLFSRAYINFRNPD
DILLFRDRFDGYVFIGKKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYKQFLE
SYSLEEEKTSASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLREEKREERRRR
ELEKKRLREEEKRKRREEDRCKRKEAEKQKRVEKDVRIKLLKKLETGEEATTEKPKERGE
TVGAGDEKQDTRPVESQPETPGERLQDGSDKEQRDKRFREKDPETSRCHADSCRKHGIHS
EFARFSRRNEDESKWGKGFTQDRGKKGQDGSVPVDVAERSGMEHKEYDSLGPRKDRPGNK
AL
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcgctcggaggagggcgccggaggctcgggcgcagtcctctctgcgcggggcccgagc
tggagggagaaactgtcgagctcggacatccacttccgccgcgactcccagcggaatgag
tcggcggcgccgccggccccgatctcgagtgagagcggggccggcaagcctcgcgaggag
aagaggacggccctgagcaaggtggtcctccggcgtctgcccccggggctcaccaaagag
cagctggaagagcagctgcgccccctgccggcgcacgattacttcgaggtagtggctgcg
gacctcagcctctgccctcacctcttctccagggcatacattaattttaggaaccctgac
gacatcctgctgttcagagaccgttttgatggatatgtcttcattggcaagaaaggcctg
gagtatcctgcagtggtggagtttgctccattccagaagattgccaaaaagaagctgaag
aaaaaagataccaagactggaagcattgaagatgatccagaatataaacagtttctggaa
tcatacagcttggaggaagagaagaccagcgctagtcctgagacgctgctgggagagata
gaagcgaagacaagagaactccttgccagaagaaccacacctcttttggaatatattaaa
aatagaaaattggaaaagcagagactccgggaagaaaaacgcgaggagcggaggaggagg
gagctagaaaagaagcgtctgcgggaagaagagaagaggaagaggagagaagaggaccgg
tgcaagaggaaggaggcagagaagcaaaagagagtggagaaggacgtgaggatcaagctt
cttaagaaactagaaacaggagaagaagcaaccacagagaaacccaaagaaagaggtgaa
actgttggtgccggagatgagaagcaggacacccggccagtagagagccagccagagacg
cctggagagaggctacaggatggcagtgataaagagcaaagggacaaacgattccgagag
aaagatcccgaaacttccagatgtcatgcagacagttgcaggaagcacggcattcactca
gagtttgccaggttttccagaaggaatgaggacgagtcaaagtggggaaaaggcttcacc
caggacagaggcaagaagggccaggatgggagtgtccccgtggacgtggcagagagaagc
ggcatggagcacaaggagtatgacagcctggggccaagaaaggatcgcccgggaaacaag
gccctgtag

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