Mastomys coucha (southern multimammate mouse): 116069692
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Entry
116069692 CDS
T07224
Symbol
Ddx39a
Name
(RefSeq) ATP-dependent RNA helicase DDX39A isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116069692 (Ddx39a)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116069692 (Ddx39a)
Spliceosome [BR:
mcoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116069692 (Ddx39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116069692
NCBI-ProteinID:
XP_031196398
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR
SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggatgtggaaaatgagcttttggattatgatgaagatgaagagccccag
gcaccccaggagagcactccagctcccccgaagaaagatgtcaaaggatcttatgtctcc
atccacagttctggcttccgggactttctgctgaagccagagctcctaagagctatagtt
gactgtggctttgagcatccttcagaggtccagcatgagtgtattccccaagccattctg
ggtatggatgtcctgtgccaggccaagtctgggatgggcaagacagctgtgtttgtgctg
gccaccctgcagcagatcgagcccgtcaatggccaggtatcagtactggtcatgtgccac
acgagggagctggccttccagatcagcaaggagtatgagcgcttctctaagtatatgccc
agtgtcaaggtatctgtgttctttggaggcctctccattaagaaggatgaagatgtgttg
aagaagaactgtcctcatgttgtggtggggacaccaggccggatcctggcacttgtgcgg
agtaggagtctcaacctgaggaatgtgaagcactttgtgctagatgaatgtgacaagatg
ctggaacagctggacatgcgccgggatgtacaggagatctttcgtctgacaccccatgag
aagcaatgtatgatgttcagcgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcctatggaggtgtttgtggacgacgagaccaagctcacactgcatggg
ctgcagcagtattacgtcaagctcaaggacagtgagaagaaccgtaagctcttcgacctt
ctcgacgtgttagagtttaaccaggtggtgatctttgtcaagtctgtgcaacgctgcatg
gccctggcccagctcctagtggaacagaatttcccagctattgctattcaccgaggcatg
gcccaggaggagcgcctgtcccgataccagcagttcaaggacttccagcgccgcatcctg
gtggctactaatctctttggcagaggtatggacattgagcgagtcaacatcgtcttcaat
tacgacatgccagaggactcagatacctaccttcaccgagtggctcgtgctggtcgtttt
ggtaccaagggcctggcagtcacttttgtatcagatgaaaatgatgccaaaatccttaat
gatgttcaggaccggtttgaagtgaatgtggctgagcttccagaagaaatagatatctcc
acatacattgagcagagccggtaa
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integrated database retrieval system
