Mastomys coucha (southern multimammate mouse): 116070272
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Entry
116070272 CDS
T07224
Symbol
Taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116070272 (Taf1c)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116070272 (Taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_HB
TAF1C_beta-prop
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
116070272
NCBI-ProteinID:
XP_031197416
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MDFPSTLRPSLFMAGPLGMTDGPDLSFMCSWRDALTLPGSQPQNCKDSTLSFSKNLLWEP
STPGPLPLVPPGPDPWDPGVTAQDFLFRGGHCYQYQSQVVLDVTEQLSRFLWDHGDIAFA
PLGKLMLENFRLEGNRGYSKKMTIVSVKRLLQDLGGHQPWGCPWASLSRRVRRFSILGGP
VLSRSVSLLMGRLLHEELAMRWEQLLMDEAFTGGALAWLPGRTARAGQLVYPSGGALDKL
YFQEVSVTSGGNPRVLEDPGHVQLRGPVRQVVTSTVQGETLLAVRSDYHCAMWKIDKQGP
PAPLQVLQVEKGATGISLSPHLSGELAICSRSGAVCLWTPQDGLQPVYKDPETLAFHDPS
PWRWADFTAHPRVLTVGDRTGVKMVDIQGPAGCGLLLFRAGAEAACQKGERVLLAQYLGQ
PGHTSTSLHLVCTQFSIYLMDERLPLVPMLKWDHGLPSAPLLARLLPPASPGHPWPLLLG
GQGGQLQLLHIAGEGTSMPQLAGPPQSLPSITDSLSAFPLLEPKRQQQLQERLEAPVIGL
AAAPPCASAPGLLLFQLSAAGDVFYQHLRLQQASSLREPLDHPAPEHPASRVTAPPVDQA
STPSWTSQASARCSRWLEALMELSPTCPVWAAPTFSHRRFLGHMEQQKSQETMLQKLRAT
MAKGQLLRPGDLSTLPRAEPPPTPQCSQQDELTERLAEAWKGQAADWWKRSHGQTSGPQT
QSKRPKRRTQLSSTFSSFTSYLDAPDASSAPCSQDLSTSEAYPQPPRTPASQELTQELWV
QGVQHERQQTLRDYVAKLPLQRNTPRPVATPPSQASSLQTMSFRQQTPVLSGSYPPRKKQ
RMGF
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggacttccccagcaccctgcgcccttcattgtttatggccggtcctcttggcatgact
gatggccctgacctgtccttcatgtgcagctggagagatgcactgaccctgccagggtcc
cagccacagaactgcaaggattcgacattgtccttttccaagaacctgctgtgggagcca
tccacaccaggacccctccccctggtgcctcctggtcctgatccctgggaccctggtgtg
acagctcaggacttccttttccggggaggtcactgctaccagtaccagtctcaagttgtg
ctggatgtcactgagcagctcagccgcttcctgtgggatcatggggatatagcctttgca
cctctggggaagctcatgctggagaacttcagattggaggggaaccggggctactcgaaa
aagatgaccatagtcagcgtgaagaggctgcttcaggacctcggtggacaccagccctgg
gggtgtccctgggcttccctcagccgccgggtgcgtcgcttctccatcctcgggggtcct
gtcctgagcaggtcagtgtcattactcatggggagactgctgcatgaagagctggctatg
cggtgggagcagttgctgatggacgaggcattcaccgggggtgctttggcctggctgcct
ggaaggacagcgcgggccggacagctggtctaccctagtggaggtgccttggacaagctg
tatttccaggaggtcagtgtgacttcaggtggcaacccccgcgtccttgaggaccctggg
catgtccagctgcggggacctgtacggcaggtggtgaccagcactgtccaaggagaaaca
cttttggctgtccgctctgactaccactgtgccatgtggaagattgataagcagggacca
ccagcacccctgcaggtgctgcaggtggagaagggggccactggtattagcctcagccct
cacctgtcaggagagctggccatctgcagccgttctggagctgtgtgtctgtggacccca
caagatgggctgcagccagtctacaaggatcccgagacgctcgccttccatgatccgtct
ccctggcgctgggcagacttcactgcccacccccgggtgctgactgtgggggaccgcacg
ggtgtgaaaatggttgatattcagggcccggctggctgtgggctgctgctgttccgtgct
ggagcagaggctgcctgccagaaaggagagcgggtgctgcttgctcagtaccttgggcag
ccgggtcacacctctacgtctctgcatctcgtctgcacccagttctcgatctaccttatg
gatgagcgcctccccctggtgccaatgcttaagtgggaccatggcctgccatctgcaccc
ctgcttgcccgcctgctacccccagctagccctggccatccatggcccctgctactggga
ggccagggtggacagcttcagctgcttcatatagcaggagaggggacttccatgccccag
ctggcagggcctcctcagtctctgccctccatcaccgactccctctctgcctttcccctg
ctggaacccaagaggcagcagcagctgcaggaacgtctggaggcaccagtcataggtctg
gccgctgccccaccctgtgcctctgccccggggctgttgctcttccagctctcagcagct
ggggatgtcttctaccagcacctgcgcctccagcaagcctccagtcttagagagccactt
gaccacccagcaccagagcatcctgcatccagggtgacagcacctccagtggaccaggca
tccacaccctcttggacctctcaggccagtgcccgttgcagccgctggctggaagccctg
atggagttgtccccgacttgtccagtgtgggccgcccccaccttctcccaccggcgcttt
ctgggccacatggagcagcagaagagccaagagaccatgctacagaagctccgagcaacc
atggccaaggggcagctcctgcggcctggggacctgagtacactccccagggcagagcca
ccccctacgcctcagtgcagccagcaggatgagctcactgagcgcttggcagaagcctgg
aaaggccaggcagctgactggtggaaaagatctcacggtcagacttctgggccccagaca
cagtccaagcggcccaagcgccggactcagctgtcgagcactttctcctcgttcacaagc
tacttagacgctccagatgccagcagtgccccttgtagccaagacctttctacctcagag
gcctatcctcagccacccaggactccagcctcccaggaattgacacaggagctgtgggtc
caaggtgtgcagcatgaacgtcaacagaccctccgggactatgtggccaagctgccactt
cagaggaacactccaagacctgtggctacaccaccctcccaagcctctagcctccagacc
atgtctttcaggcagcaaacaccagtactctctggctcttatcctccccggaagaagcaa
cgaatgggcttctga
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