Mastomys coucha (southern multimammate mouse): 116070424
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Entry
116070424 CDS
T07224
Symbol
Tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcoc03016
]
116070424 (Tarbp1)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116070424 (Tarbp1)
Enzymes [BR:
mcoc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
116070424 (Tarbp1)
Transfer RNA biogenesis [BR:
mcoc03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
116070424 (Tarbp1)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116070424 (Tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
116070424
NCBI-ProteinID:
XP_031197698
LinkDB
All DBs
Position
Unknown
AA seq
1579 aa
AA seq
DB search
MERVLADALLTQSPEPCTLLGALCGGEASAERAETLRLVLQRLEERGAGAGALAKAAHEV
AKGHLVPLMHASQGGGPARLRVLRAASAALRSCARLAGPELAVTLAEEALRELPSAPAVE
LLAAVAPCLRAPEDAPLLRRLARASVELALAGDAPSAVGARLLPALAQSAEPALRAAWEA
LSYAGPGAEGSPGPELLVLSALAEKLLPNHERHGDLDARLCGRFWRTVQSGLGRAQDALT
RKRARYLLQRAVQVSTELAVDCSCGPQDTKGPSLFWWSEKKKDELLKFWENYILIMEVLE
GNQIHVIKPVLPKLNSLFEYAVSEENGCWLFHPSWHMCIYKRMFEGENKILAKEGVIHFL
ELYEVKSLPYSPELSEFITGPLMDALSESCLYSRSPGQPLGSDSPLGLKLQKFLVTYTSL
LPEETKSHFLLKFIQRMADRHWCAVPVLFLSRALASIPSCKALGGEGLLALRDVLQCTMI
THQVLLRGAAQCYLLQTAMHLVDVEKVSLSDISAFLMSLRQEESLGRGTVLWTELCDWLR
VNERYFKQSSIGGSDGCEASLNAYVKNLVQEFVKSPGWEKERSFMPDWLEARLTALMVLL
AVDMEGEKTKFREKQRTQNVLRIFLDPLLDALGKLGTNAYMPLLRTDRCLQLLVRLLHSC
VPRGSCAQDDEVSTALQASIMSAAESVSQFVLRRLTMNELQDVADLDRCQLYLTVLAELM
SLQVKLGWKAGNPISRVISPLKNACVRHLQEAEDRQELTLSLQVQRAVSMATLAVLCEAV
DQHPVLQPDFPNAEPVDRFLLALPLNHMLQKPRLEEQSISVCPLENGSVFEESSSSKGWG
KIVAQYLHHQWICLSFLLRKHHPLIPATERDVLECFLPAVEMPVQTLQSALEVLTVLPAS
RILPVFRCMEVLVPKLLPSEEMLCIESFDVAWKLISSLSNTQLTFWPNLKAFVHFVFDHE
ILTIAAKLKSQTYFKIKEIMCKMIEMSSMKSGVFNILIRHCCQSWLAAAPGVPQGSFSSA
KDYSELVLEACVFGAVFRRDQRLIQDVQTFIENLGQGCAANSIIENTKREDYYVRICAIK
FLCLLDSSDVSHKLFLEDLTIKLLDKDESASRSRIRYHENSLQHRVKNRVWQTLLVLFPA
FDQNFLHGIIDKVFHAGFTNNQASIKYFIEWLIILILHKFPEFLPKFWACFSYGEEKIKT
SICTFLSVLSHLDIIVQNIPEKKQVLKQALTVALQWCLSHNFSVRLYALVALKKAWHLCK
ALQFEECGAWTTVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETIFYT
LPRLSGVTEEEWIALDKFANFTDIPSNAGSQWYLSRAALGELSPGDWSQQDPGSTLGEAD
SQSEWADVQKKIIPWGQSALESDLELAFQDRAAKLGKSISRLIVVASLIDKPTNLGGLCR
TCEVFGAAVLVVGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMDYLQQKKAEGYTVIG
VEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQRLDVCVEIPQQGIIRSLNVHVSGA
LLIWEYTRQQLLRCTELPS
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgttggcggacgcgcttctaacgcagagtccggagccctgcacgttgctg
ggcgcgctgtgcggcggggaggcgagtgcggagcgggcggagaccctgcgcctggtgctg
cagcggctggaggagcgcggcgcgggcgccggcgcgctggccaaggcggcacacgaggtg
gccaagggccacctggtgcccttaatgcacgcgtcccagggcggagggcctgcgaggctc
cgcgttctccgagcggctagtgcggcgctgcgctcgtgcgcgcgcttggccggtccggag
ctggcggtcactctggccgaagaagcgctgcgcgagctgccgagcgcgccggccgtggag
ttgctggccgccgtggcgccgtgtctgcgcgcgccggaggatgccccactgctgcgtcgt
ctggcgcgcgcgtctgtggagctggcgctggccggggacgcgccgtcggccgtgggagcg
cgcctgctgcccgcgctggcacagagcgcggaaccggctctgcgggcggcgtgggaggcg
ctgagctacgcggggccgggagctgagggcagccccgggccagagctgctggtgctgagc
gcactggccgagaagctgctgcccaaccatgagcgtcacggggatctcgacgcccggctc
tgcggccgcttctggagaaccgtacagtcggggctgggccgcgcgcaagacgcgctcacg
cgcaagcgcgcgcgctacctgctgcagagggctgtacaggtgtctacagagctggcagtg
gactgctcctgcggcccccaggacacgaagggtccgagcctattctggtggtctgagaag
aaaaaagacgagcttctaaagttttgggaaaactatatcttgatcatggaagttttggaa
ggaaaccagatacatgtcataaagccagtcttaccaaagctaaacagtctgtttgaatac
gcagtctcagaggagaatggctgctggcttttccatccctcctggcacatgtgcatctat
aagagaatgtttgaaggtgagaataaaattctggccaaagaaggtgtgatccacttcttg
gagctgtatgaagtgaaatcgcttccttactctccggaactctcagagtttattactggc
ccgctgatggatgccctctcagagagctgcctgtacagcaggtccccagggcagccattg
ggaagtgactctcccctgggattaaagctgcagaagtttctagtcacttacacttccctt
cttccagaagaaacaaaaagtcatttcctgttaaagttcattcagaggatggcagacaga
cactggtgtgcagtgccggttttgttcctgtccagagctttggcaagcatacccagctgt
aaggccctgggaggagaagggcttctcgccctcagggatgttctccagtgcaccatgatc
acacaccaggtcctcctgaggggagcagctcagtgttatcttcttcagacagccatgcat
ctggtggatgtggagaaagtgtctctttctgacatctcagcttttctcatgtctctgaga
caagaggagtccttgggacgtgggactgtgctctggacagagctctgtgactggctacgt
gtcaatgaaagatactttaagcagtcctccattggtggctctgatggatgcgaggcatcg
ttaaacgcttacgtgaagaacctagttcaagagttcgtgaagtctcctggctgggaaaaa
gaaagaagcttcatgccagactggctggaagccaggctgacggctctcatggtcctgctg
gctgtggacatggaaggagagaagaccaagttcagggaaaagcagaggactcagaacgtg
ttgaggatcttcttagaccccttgctggatgccctagggaagctcggcaccaatgcctac
atgcccttgctgaggactgaccggtgcctccagctgctggtgaggttgctgcattcttgt
gtgccaagaggttcctgtgcccaggatgatgaggtatccactgccctccaggcctccatc
atgtctgctgcggagagcgtgtctcagtttgtgctcaggagactcaccatgaacgagctg
caggacgtggcagatctggaccgctgccagctctacctgacagtgttggctgagctcatg
agtctccaggttaagctgggctggaaagcaggcaaccccatcagccgagtcatttctcct
ttgaaaaatgcatgtgttcgccatctgcaggaggctgaggacagacaggagctgaccctg
agtcttcaggtgcagagagcggtcagcatggccaccctggcagttctgtgtgaggctgtg
gaccagcaccccgtgctgcagcctgactttcccaatgctgagcccgtggacaggttcctg
ttagcgcttccactcaatcacatgctgcagaagccccgtttagaggagcagagcatcagt
gtctgtcccctggagaatggcagtgtctttgaagaatcatcatcttccaaagggtggggg
aaaatagttgcacagtatctacaccatcagtggatctgcctctccttcctgctgagaaag
caccacccccttattccagccacggaaagagacgtgctggagtgctttctccctgctgtt
gagatgcccgtgcagaccctgcagtcagcgctggaagtcctcaccgtcctccctgccagc
cgcatattgcctgtgttccgctgcatggaggtgttggttcccaagctcctgccctccgag
gagatgctctgcatagaatcctttgacgtggcctggaaacttatatcttccttgagcaac
acacagctgacgttctggcctaatttaaaagctttcgttcactttgttttcgatcatgag
attcttaccattgctgcaaaacttaagagccagacgtacttcaaaataaaagagattatg
tgcaagatgattgaaatgtcctccatgaaatcaggtgtcttcaatattttgatacgccac
tgctgccaatcttggctagcagctgctcctggcgtgccccaggggtcattctccagtgct
aaggattacagtgaacttgtcctggaggcttgtgtgtttggagcagtgtttaggcgtgat
cagagacttattcaggatgtccaaaccttcatagaaaaccttggacaaggctgtgcagcc
aactccatcattgagaacactaagagagaagattattatgtgagaatctgtgccatcaaa
ttcttgtgtctgctagatagctccgatgtgtcccacaagttgttcttagaagatcttacc
atcaagctcttggataaggatgaatcggcatccaggtccagaattcgataccatgagaac
tccctccagcaccgggtgaagaaccgtgtgtggcagaccctgcttgtcctcttccctgca
tttgatcagaacttcttacatgggattattgacaaggttttccatgctggcttcacgaat
aatcaagcttccataaaatattttattgagtggcttattatattgattcttcataaattc
cctgagtttcttccaaagttctgggcgtgtttttcttacggtgaagaaaaaattaaaaca
agcatttgtacatttttatctgttttatcacatttggacatcatcgttcagaatattcca
gaaaagaagcaggttctgaaacaagccctcaccgttgccctccagtggtgtctgagccac
aacttcagtgttcggctctatgctctggtagccctcaagaaggcctggcatctgtgtaaa
gcactgcagtttgaagagtgtggcgcctggaccacagtcatcgagtgtagcctcagccaa
gcggagagcatgcacggagcagggaacgccaggaagaactggcagcgcatccaggaccat
ttcttcttctccacctttcaccccctgaaggactactgtctggagaccatattttacaca
ctcccacggctctcgggtgtcactgaagaagagtggatcgccctggataaatttgccaac
ttcacagacatcccttccaatgcagggtctcagtggtacctgtctagggctgcactcggt
gagctgagtccaggagactggtcccagcaggacccaggttctactttgggtgaagcggac
agccaatcagagtgggctgatgtccagaaaaaaatcatcccatggggacaaagtgctctg
gagtcagacctggagcttgcctttcaggaccgggctgccaagctcggaaagtctattagc
agactgatcgttgtggcctcactcatcgacaagccaaccaacctgggagggctgtgcagg
acctgcgaggtgtttggggctgcagtacttgtcgtcggcagtcttcagtgtgtcagcgac
aggcagttccagcacctcagcgtctctgcagagcagtggcttcctctggtggaggtgaga
ccatcccagctgatggattatctgcagcaaaaaaaggcggaaggctacactgtcattggg
gtagagcagacagcgcaaagctcagacctggcccagtaccgcttccctgagaagtcgctg
ctgctgttgggaaatgagcgggaaggaatcccagccaacctgatccagaggctggatgtg
tgtgtggagattcctcagcagggcatcattcgctcactgaatgtgcacgtgagcggggct
ctgctgatctgggagtatactagacagcagctgctcaggtgtacagagctaccatcctga
DBGET
integrated database retrieval system
