Mastomys coucha (southern multimammate mouse): 116073480
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Entry
116073480 CDS
T07224
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116073480 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116073480 (Ddx6)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116073480 (Ddx6)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116073480 (Ddx6)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116073480 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
116073480 (Ddx6)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116073480 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
116073480
NCBI-ProteinID:
XP_031201275
LinkDB
All DBs
Position
Unknown
AA seq
484 aa
AA seq
DB search
MSTARTENPVLMGLSSQNGQLRGPVKASAGPGGGGSQPQPQPMNQLKNTSTINNGTQQQA
QSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQ
VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH
VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAE
DEKP
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttctcatgggtctgtccagtcagaacggccag
ctgaggggccccgtgaaggccagtgctggccctggaggagggggctcacagccacagcca
cagccaatgaaccagttgaagaacaccagcacaatcaataacggcactcagcagcaagca
cagagcatggccgccactattaaacctggtgatgactggaaaaagactttaaaactccct
ccaaaggatctaagaatcaaaacttcagatgtgacctccacaaaaggaaatgagtttgaa
gattactgtttgaaacgagagttgctaatgggaatttttgaaatgggctgggaaaaacca
tctcctattcaggaggagagcattcccattgctttatctggtagggacatcttagctaga
gcgaaaaatggaacaggcaaaagcggtgcctacctcatccccttacttgaacggctggac
ctgaagaaggacaatattcaagcaatggtgattgttcctactagagaacttgctctacag
gtcagtcagatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaacc
actggaggaaccaatttacgggatgacataatgaggcttgatgatacagtgcatgtggtg
attgctacccctggcagaatcctggatcttatcaagaaaggagtagcaaaggttgatcat
gtccagatgatagtattggatgaggcagataagttgttgtcacaggattttgtgcagata
atggaggatattattctcacactacctaaaaataggcagattttactatattccgctact
ttccctcttagtgtacaaaagtttatgaattcccatctgcaaaaaccctacgagataaac
ctgatggaggaactaactctgaaaggagtaacccagtactatgcttatgtaacagagcgc
caaaaagtgcactgcctcaatacacttttctccaggcttcagatcaaccagtcgatcatt
ttctgcaactcttctcagagagttgaattgctggccaagaagatttctcagctgggttac
tcttgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtctttcatgat
ttccgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgat
atacaagctgtgaatgtggttataaactttgacttcccaaagctggcagagacctatctt
catcgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcaca
tatgatgatcgcttcaacctgaagagtattgaagagcagctggggacagagatcaaaccc
atcccaagcaacattgacaagagcctgtatgtggcagaataccacagtgagcctgcagaa
gacgagaaaccttaa
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