KEGG   Mastomys coucha (southern multimammate mouse): 116073519
Entry
116073519         CDS       T07224                                 
Symbol
Trim42
Name
(RefSeq) tripartite motif-containing protein 42
  KO
K12018  tripartite motif-containing protein 42
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mcoc01009]
    116073519 (Trim42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mcoc04121]
    116073519 (Trim42)
Protein phosphatases and associated proteins [BR:mcoc01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     116073519 (Trim42)
Ubiquitin system [BR:mcoc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    116073519 (Trim42)
SSDB
Motif
Pfam: zf-B_box fn3 Pur_ac_phosph_N CHDCT2 Ig_DSCAM-DSCAML_C DUF386
Other DBs
NCBI-GeneID: 116073519
NCBI-ProteinID: XP_031201349
LinkDB
Position
Unknown
AA seq 723 aa
METAMCVCSPCCTWQRCCPRLFSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCAEN
PNCHWCCCSWANDPNCKYCCTASTNLKCYYYESRCCRNITVTFRKGRLRSIRTSSKTALR
VGSSDTQLDEPKTMPSSSHLVSHLTCPMCNRLRLHSFMLPCNHSLCEKCLRQLQKHAEVT
ENFFILICPMCNRSHCMPYSHQMHLPENYLRGRLTKRYMQQHGYLKWRFDRSSGPILCQV
CRTRRIAYKRCVTCRLNLCNDCLKAFHSDVAMQDHIFVDTSAEDQDEKICIHHPSSRINE
YCRNDNQLLCTFCKIAFHNGHDTVSLIDACSERSAALFSAIAKFKAVRYEIDNDLMEFNI
LKSSFKADKEAKRKEIRNGFLKLRAILQEKEKIIMEQIENLEVSRQKEIEKYVYITTMKV
NEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEEGIQNTFRPDPQLRLHSLQCIPLDFS
ELSNAIHDLFPTGPKKTCSSGDSLPSQYPVHSEMMIARKVTFSTHSFGNQQIYQRSSSLM
SFNAANDKGKMSLENYGRAQSAAASKTTDGLYTYWSAPGETQPPQSSNSFHNWYSFNDTS
VRTPGPIVIYQTLVYPRAAKVYWTCPTEDVDSFEMEFYELVTTPPNNVRTELCGQIRDIL
QQNLELHNLTPNTEYLFKVRAINDNGPGQWSDICKVVTPDGRGKNRAKWGLLKNIQSALQ
KRF
NT seq 2172 nt   +upstreamnt  +downstreamnt
atggagactgctatgtgtgtctgttctccctgctgcacctggcagagatgctgcccccgg
ctattctcctgtctctgctgcaagttcatcttcacctccgagcggaactgtacctgcttc
ccctgcccctacaaggatgagcggaactgccagttctgccactgcacctgtgcggagaac
cccaactgccactggtgctgctgctcctgggccaatgaccccaactgtaagtactgctgc
acggccagcaccaacctgaagtgctactactacgagagccgatgctgccgcaatatcacc
gtcacattcagaaagggtcgccttcgaagcatccgcacctcttctaagaccgccctccga
gtggggagcagcgacacccagctggatgagcccaagaccatgcccagcagcagccacctg
gtgagccacctcacctgccccatgtgcaaccggctgcgcctgcactccttcatgctgccc
tgcaaccacagcctgtgcgagaagtgcctgaggcagctgcaaaaacacgccgaggtcact
gagaatttcttcatcctcatctgccccatgtgcaaccgctcgcactgcatgccctacagc
caccagatgcacctgccagaaaactacctccgtgggcgcctcaccaaacgctacatgcag
cagcacggctaccttaagtggcgcttcgaccgctcctcagggcccatcctctgccaggtg
tgccgcacccggcgcattgcctacaagcgatgtgtcacctgtcgcctcaacctgtgcaac
gactgtctcaaggccttccactccgacgtggccatgcaggaccacatcttcgtggacacc
agcgccgaggaccaggacgagaagatttgcatccaccatccatccagccgcatcaacgag
tactgccgcaacgataatcaactgctctgtaccttctgcaagatcgctttccacaatggc
catgacacggtcagcctcatagatgcctgctccgagaggtctgctgccctcttcagcgcc
atcgccaagttcaaagcagtccgatacgaaattgataatgacctgatggaattcaacatt
ctaaagagcagctttaaagccgacaaggaagcaaagaggaaggagattcggaacgggttc
ctcaaactgcgagccatccttcaagagaaagagaagataatcatggaacagatagagaat
ctggaagtgtccaggcagaaagaaattgagaaatatgtgtacattacaaccatgaaagtg
aacgagatggatggcctgatcgcttactccaaggaagccctgaaggagacaggccaggtg
gccttcctgcagtctgccaagatcctggtggaccagattgaggagggcatccaaaatacc
ttcaggcctgaccctcagctgcggcttcactccctacaatgcatccccttggatttttct
gaactctccaatgccatccacgatctctttcccacaggacccaaaaaaacttgctcctcg
ggggactccctcccttcccagtatcctgtccactcagagatgatgattgccaggaaggtg
acgttcagcacccacagcttcggcaaccagcagatataccagcggagctcttctttgatg
tccttcaatgctgccaatgacaagggcaagatgagtctggagaactacgggagagcccag
tctgcagccgcctccaaaacgactgatggcctttatacctactggagtgccccaggggaa
acccagcccccgcagagcagcaacagcttccacaactggtattccttcaacgacacctct
gtgaggaccccaggccccattgtcatctaccagacactggtgtacccaagagccgccaag
gtttactggacatgcccaacagaagatgtggactcctttgagatggaattctatgagctc
gttaccactcctcctaacaatgtgcgcacagagctctgtggacagattcgggacatccta
cagcagaacctggagctgcacaacctgacccccaacactgagtatttgtttaaggttaga
gccatcaatgacaatggtcccgggcagtggagtgacatctgcaaggtggtgacaccagat
ggccgtgggaagaacagagctaagtggggactgctgaagaatatccagtctgccctccag
aagcgcttctga

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