Mastomys coucha (southern multimammate mouse): 116073565
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Entry
116073565 CDS
T07224
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03082
ATP-dependent chromatin remodeling
mcoc04714
Thermogenesis
mcoc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116073565 (Smarcc1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116073565 (Smarcc1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116073565 (Smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116073565 (Smarcc1)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116073565 (Smarcc1)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116073565 (Smarcc1)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116073565 (Smarcc1)
PBAF complex
116073565 (Smarcc1)
GBAF(ncBAF) complex
116073565 (Smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
116073565
NCBI-ProteinID:
XP_031201484
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MAATAGGGPGAAAGAVGAGGAATASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRRDKQVLVHWGFYPDSYD
TWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKEE
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDPDGQQPEKAENKVENESDEGDKIQDRENEKNSEKEQDSDVSEDVKPEEKENEENKEL
TDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QHGQTPQQAHQHSGGPGMAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPG
SMMPGQPMPGRMIPTVAANIHPTGGGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQ
PPPPPADGVPPPPAPGPPASATP
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgacagcgggtggcggcccgggagcagcagcaggcgccgtgggtgcagggggt
gcggcgacggcctccggcctggccgtgtaccggaggaaggacgggggcccggccagcaag
ttttgggagagcccggacactgtgtcccagctagattcggtgcgagtctggctgggcaag
cactacaagaagtacgtccatgcggatgctcctaccaacaagacactggctggactggtc
gtgcagctcctacagttccaagaagatgcctttgggaagcatgtcaccaacccagctttc
accaaactacctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcacatt
cttggggcagcttacaagtacaaaaatgagcagggctggaggagatttgatcttcaaaat
ccatcccgaatggatcgtaatgttgaaatgttcatgaacattgagaaaacattggtacag
agcaactgtctgactagacctaacatctacctcatcccagacattgacttgaagttggct
aacaagttgaaagatatcatcaaacggcatcaggggacatttactgatgagaagtcaaaa
gcttcccaccatatttatccatatccttcctcacaagaggatgaggagtggctgaggcca
gtgatgaggagagataagcaggtgctggtgcactggggcttctacccagacagctatgac
acttgggtccacagtaatgatgttgatgctgaaattgaagatgcaccaatcccagaaaag
ccatggaaggttcatgtaaaatggattttggacactgacgttttcaatgaatggatgaat
gaagaggattatgaagtggatgagaatagaaagccagtgagctttcgtcaacgaatttca
acaaagaatgaagagccagtccgaagcccagaaaggagagatagaaaggcatctgccaat
gctcgaaagagaaagcattccccttctcctcctcctcccacacctacagagtcccggaag
aagagtggaaagaaaggacaggctagcctttatgggaaacgtagaagtcaaaaggaagaa
gatgagcaagaagatcttaccaaggatatggaagacccaacacctgtacctaatatagag
gaagtggttctccctaaaaatgtaaacccaaagaaggacagtgaaaacacaccggttaaa
ggaggcacggtggcagacctagatgagcaggatgaagaagcagttacgacaggaggaaag
gaagacgaagatcccagcaaaggtgatccaagtcgctcagttgacccaggtgaagacaat
gtcacagaacagaccaatcacatcatcattcccagttatgcgtcctggtttgattataat
tgtattcatgtgattgaacggcgcgcacttccagagttttttaatggaaaaaacaagtcc
aagactcctgagatatacttggcatatcgaaattttatgatcgacacataccgtctaaac
cctcaagaatatttaaccagcactgcttgtcggcgaaacctgactggagatgtgtgtgct
gtgatgagggttcatgcctttttagagcagtggggtcttgttaactaccaagtcgatcca
gaaagtcgacccatggcaatgggacctcctcctactcctcatttcaacgtgttagctgac
acaccctctgggcttgtgcccctgcatcttcgatcacctcaggtccctgctgctcaacag
atgttaaattttcctgagaagaacaaggaaaaaccaattgatttacagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagtaaaggtgctagtgccggaaga
gagtggacggagcaagagacccttctcctcctagaggctctggagatgtacaaggatgat
tggaataaagtctcagaacatgttggaagtcgtactcaggacgaatgcatcctccacttt
ttaaggcttcccattgaggacccataccttgaaaattcagatgcctctcttgggcctctc
gcttaccagcctgtccctttcagccagtcgggaaaccctgtgatgagtactgttgccttt
ttagcatcggttgttgaccctcgtgtagcatctgctgcagcaaaagcagctttggaggag
ttttctcgtgtccgagaagaagtacccctagaattggttgaagcacatgtcaagaaagta
caggaagccgcaagagcctctgggaaggtggaccccacctatggcttggagagcagctgt
attgctggcacagggccggatgagccagagaagcttgaaggatctgaagaagaaaagatg
gaaacagatcctgatggtcagcagcctgaaaaggcagaaaacaaagtggaaaatgaatcg
gatgaaggtgataaaatacaagatcgagagaatgaaaaaaacagtgagaaggaacaagat
agtgacgtcagtgaggatgtcaagccagaagaaaaggagaatgaagagaacaaagagctc
actgatacatgtaaagaaagagaaagtgatactgggaagaagaaagtggaacacgagatt
tctgaaggaaacgtagccacagccgcagcagctgctctggcctcagctgctaccaaagcc
aagcacctggcagctgtcgaagaaagaaagatcaagtccctggtcgctctcctggttgaa
acgcagatgaagaaactcgagatcaaactccgacattttgaagagctggagactattatg
gacagagagaaagaggctctagaacaacagagacagcagttgcttactgagcgtcaaaac
ttccacatggaacagttgaaatatgctgaactacgtgctcgacagcaaatggaacagcag
cagcatggccagacacctcagcaagcgcaccagcactcaggaggacctgggatggcccca
ctgggagcagcaggccaccctggcatgatgcctcatcagcagccccctccctaccctctg
atgcaccatcagatgccaccaccccatcctccccaaccaggtcaaataccaggccctggc
tccatgatgcctgggcagcccatgccaggtcgcatgattcccactgtggcagccaacatt
caccctactgggggtggccctacccctcccggcatgcctccaatgcccggaaacatctta
ggaccccgggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcagcag
ccgccgcctccacctgcagatggggtccctccacctcctgctcctggcccaccagcctcg
gccactccctag
DBGET
integrated database retrieval system
