Mastomys coucha (southern multimammate mouse): 116073826
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Entry
116073826 CDS
T07224
Symbol
Rora
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04659
Th17 cell differentiation
mcoc04710
Circadian rhythm
mcoc05017
Spinocerebellar ataxia
mcoc05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
116073826 (Rora)
09159 Environmental adaptation
04710 Circadian rhythm
116073826 (Rora)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
116073826 (Rora)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
116073826 (Rora)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcoc03000
]
116073826 (Rora)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
mcoc03310
]
116073826 (Rora)
Transcription factors [BR:
mcoc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
116073826 (Rora)
Nuclear receptors [BR:
mcoc03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
116073826 (Rora)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
116073826
NCBI-ProteinID:
XP_031201824
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All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MESAPAAPDPAASEPGSSGSEAAAGSRETPLTQDTGRKSEATGAGRRQSYASSSRGISVT
KKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRT
SRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE
PLTPTYNISANGLTELHDDLSTYMDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIK
PEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITW
QTFLQEEVENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS
LEVVFIRMCRAFDPQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI
ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRAL
CGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggctcg
gaggcggccgccggctccagggagaccccgctgacccaggacacgggccgcaagagcgag
gcaacgggcgcggggcgcaggcagagctatgcgagctccagccgaggtatctcagtcacg
aagaagacacacacatctcaaattgaaattattccatgcaagatctgtggagacaaatcg
tcaggaatccattatggtgtcattacgtgtgaaggctgcaagggctttttcaggagaagt
cagcagagcaatgccacctactcctgtcctcgtcagaagaactgtttgatcgatcggacc
agcagaaaccgctgccagcactgtcggctgcagaaatgcctggccgtggggatgtctcga
gatgctgtcaagtttggccggatgtccaagaagcaaagagacagcttgtacgccgaggtg
cagaagcaccggatgcagcagcagcaacgagaccaccagcagcagcctggggaggctgag
ccgctgacacccacctacaacatctcagccaatgggctgacggaactgcatgatgacctc
agcacctatatggacggacacacccccgagggcagcaaggccgactcagccgtcagcagc
ttctacctggatatccagccctccccagaccagtcgggattggacatcaatgggatcaaa
cccgaacccatatgtgactacacaccagcatctggcttcttcccctactgctccttcacc
aatggagagacttccccaactgtgtccatggcagaactagaacaccttgcacagaacata
tccaaatcccacctggaaacctgccaatacttgcgggaagagctccagcagataacgtgg
cagaccttcctgcaggaggaggttgagaactaccagaacaagcagagagaggtgatgtgg
cagctgtgtgccatcaagattacagaagctatccagtacgtggtggagtttgccaaacgc
attgatggatttatggagctgtgtcaaaatgatcaaattgtgcttctaaaagcaggctct
ctagaggtggtgttcattaggatgtgccgtgcctttgaccctcagaacaacaccgtgtac
tttgacgggaagtatgctagccccgatgtcttcaaatccctaggttgtgaagacttcatt
agctttgtgtttgagtttgggaagagtttgtgttctatgcatctgaccgaagacgaaatc
gcgttattttctgcatttgtactgatgtcagcagatcgctcgtggcttcaggaaaaggta
aaaatagaaaagctgcaacagaagattcagctagcccttcagcatgtcctacagaagaac
caccgagaagatggaatcctaacaaagctaatatgcaaggtgtctacgttaagagcccta
tgtggacgacatacggaaaagctaatggcatttaaagcaatatacccagacattgtgcga
ctccattttcctccgttatacaaggaattgttcacttcagaatttgagccagcaatgcaa
atcgatgggtaa
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