Mastomys coucha (southern multimammate mouse): 116073964
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Entry
116073964 CDS
T07224
Symbol
Col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04382
Cornified envelope formation
mcoc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116073964 (Col7a1)
09158 Development and regeneration
04382 Cornified envelope formation
116073964 (Col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Pur_ac_phosph_N
VWA_2
Kunitz_BPTI
Ig_DSCAM-DSCAML_C
Interfer-bind
DUF4992
Motif
Other DBs
NCBI-GeneID:
116073964
NCBI-ProteinID:
XP_031202218
LinkDB
All DBs
Position
Unknown
AA seq
2950 aa
AA seq
DB search
MRLRLLVAALCTAEILVGAPGVWAQPRERVTCTRLYAADIVFLLDGSSSIGRSNFREVRG
FLEGLVLPFSGAASAQGVRFATVQYSDDPQTEFGLDTLGSGRDTIRAIRELIYKGGNTRT
GAALHHVSDRVFLPHLTRPGIPKVCILITDGKSQDLVDTAAQKLKGQGVKLFAVGIKNAD
PEELKRVASQPTGDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVALPSDDTPSGPRDLV
LSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNVPAGETSVRLQGLRP
LTDYQVTVVALYVNSIGEAVSGTARTTAKEGLELSIQNITSHSLLVAWRRVPGANGYRVT
WRDLIGGQVQQHNLSPEQGSVFLDHLEPGTDYEVTVRALFDHSVGPATSLTTRTASSVEQ
TLHPVILSPTSILLSWNLVPEARGYRLEWRRESGLEPPQKVELPPDVTRHQLDGLQPGTE
YRLTLYTLLEGREVATPAMVVPTELEQLVRPVMNLQATELPGQRVRVSWNPVPEATKYRV
IVRTQGAKRTQLIPGSQTTFDLDDVRPGISYTVQVSALVGTHEGDASILTIHRDPEAPLV
VPGLQVVASDATRIRVAWGLVPGASGFLISWRIGSGSESSQMMTADSTVTDILGLQPGTS
YQVSVSALRGREKGPPVVIVARTDPLGPVRRVHLTQAGSSSVSITWTGVPGATGYKVSWH
SGHDPEKSQFVSGDATVAEIEGLEPDTEYIVRVRAHVAGVDGAPASVVVRTAPEPVGSVS
KLQILNASSDVLRVTWVGVPGATSYRLEWGRSEGGPMRQQKVPGNKDSAEIRDLEGGISY
SVRVTALVGDREGAPVSIVVTTPPEAPALLETLQVVQSGEHSLRLRWERVPGAPGFHLHW
QPEGGEEQSLSLGPESNSYNLVGLEPATKYQVWLSVPGQTGEGPPRKVTAYTEPSHMPST
QLRVVDTSIDSVTLTWTPVSRASGYILSWRPLRGTGQEVSGTPQTLPGMASSHRVTGLEP
GISYVFSLTPIQSGVRGSEISVTQKPACPRGRMDVVFLLHATRDNAHNAEAVRRVLERLV
SALGPLGPQAAQVGLLTYSHRPSPLFPLNSSHDLGVILQKIRDIPYVDPSGNNLGTAVTT
AHRYFLASNAPGRRQQVPGVMVLLVDEPLRGDIFSPIREAQASGLKVMALSLVGADPEQL
RRLAPGMDPIQNFFAVDNGPGLDRAVSDLAVALCQAAVTIQPQTEPCAVHCPKGQKGEPG
VPGLQGQAGPPGPPGLPGRTGAPGPQGPPGSTQAKGERGFPGPEGPPGSPGLPGVSGSPG
IKGSPGWPGPRGEQGERGPQGPKGEPGEPGQISGGGGPGLPGKKGDPGPSGPPGPRGPLG
DPGPRGPPGLPGTSVKGDKGDRGERGPPGPGIGASGQGDPGLPGLPGSPGPQGPIGRTGE
KGEKGDCEDGGPGLPGPPGAPGEPGLRGAPGITGPKGDRGLTGTPGEPGVKGERGHPGPV
GSQGLPGAAGYPGAQGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGEAGLPGP
RGASGSKGEQGAPGLALPGDPGPKGDPGDRGPTGLTGRTGPTGDSGPPGEKGEPGRPGPP
GPVGPRGRDGEAGEKGDEGISGEPGLPGKAGERGLRGAPGPRGPVGEKGDQGDPGEDGRN
GSPGSSGPKGDRGEPGPPGPPGRLVDAGIDSRDKGEPGQEGPRGPKGDPGPPGASGERGI
DGLRGPPGPQGDPGVRGPAGDKGDRGPPGLDGRSGLDGKPGAPGPPGLHGASGKAGDPGR
DGLPGLRGEHGPPGLPGPPGVPGKAGEDGKPGLNGKNGDPGDPGEDGRKGEKGDSGAPGR
EGPDGPKGERGAPGNPGLQGPPGLPGQVGPPGQGFPGVPGIMGPKGDRGETGSKGEQGLP
GERGLRGEPGGLPNAERLLETAGIKVSALREIVDTWDESSGSFLPVPERRPGPKGDPGDR
GPPGKEGPIGFPGERGLKGERGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPGR
AGGSGEAGRPGERGERGEKGERGEQGRDGLPGLPGPPGPPGPKVAIEEPGPGPAREQGPP
GLKGAKGEPGSDGDPGPKGDRGVPGIKGDAGEPGKRGQDGNPGLPGERGVAGPEGKPGLQ
GPRGTSGPVGSHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPTGAVGLPG
PPGPSGLVGPQGSPGLPGQVGETGKPGPPGRDGSSGKDGERGVPGVPGSPGLPGPVGPKG
EPGPVGAPGQVVVGPPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGRAGEP
GDPGEDGQKGAPGLKGLKGEPGIGVQGPPGPSGPPGMKGDLGPPGAPGAPGVVGFPGQTG
PRGETGQPGPVGERGLAGPPGREGAPGPLGPPGPPGSAGAPGTSGLKGDKGDPGTGPPGP
RGERGEPGVRGEDGHPGQEGPRGVMGPPGSRGERGEKGDAGAAGLKGDKGDSAVIEGPPG
LRGAKGDMGERGPRGIDGDKGPRGESGNPGDKGSKGEPGDKGSAGSIGIRGLTGPKGEPG
AAGIPGEPGAPGKDGAPGFRGDKGDIGFTGPRGLKGERGIKGTCGLNGEKGDKGEAGFPG
RPGLAGKKGDMGEPGMPGQSGAPGKEGLIGPKGDRGFDGQSGPKGDQGEKGERGPPGVGG
SPGARGNDGSSGPPGPPGGVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERGEQGR
PGPAGPRGEKGAAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLPGYASDTAGPQLHR
VPVLRVSHVEEEAHLTLPAGQVPPEDDDDFSEYSVYSVEDYQDPEVPWDGDAEIKGWDQR
GSDLCSLPLDEGSCTAYTLRWYHRAVPGGTACHPFVYGGCRGNANRFGTREACERRCPPQ
GVHSQKTGAA
NT seq
8853 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcgactcctggtcgctgcactgtgcactgccgagatcctggtgggagcaccc
ggagtgtgggcccagcccagagagagagtgacctgcacacgtctttacgccgctgacatt
gtgttcttactcgatggctcatcatccattggccgcagcaactttcgagaagtgcgggga
ttcctggaggggctggtgctgcccttctcaggagcagccagtgcacagggcgtccgattt
gccacagtgcaatacagtgatgatccacagacagaatttggtctggatacgcttggctct
gggcgtgacaccatccgagccatccgtgagctcatctataaaggtggtaacactcgcacg
ggggccgctcttcaccatgtttccgaccgtgtcttcctgcctcatctaacacgtcctggc
atccccaaggtctgcatcctgatcacagacgggaaatcccaagatttagtggacacagct
gctcaaaaactgaaggggcagggagtcaagctgtttgctgtgggaatcaagaatgctgat
cccgaggaactgaagcgtgtcgcctcacagccaaccggagatttcttcttcttcgtcaat
gacttcagcatcttgaggaccctgttgcccctcatttcccggagggtgtgcacaactgct
ggtggtgtgcctgtggccctgccttctgatgacactccatctgggccccgggacctggtg
ctatctgagccaagtagccaatccttgcgagtacagtggacagcagccagtggccctgtg
actggctacaaggttcagtacacacctttgacaggactagggcagccgctgccaagtgag
cgacaggaggtgaatgtcccggctggtgagaccagcgtgcgactacagggtctccggcca
ctaacagactaccaagtgactgtggttgccctctatgtcaacagcatcggggaggccgtg
agtgggacagctcggaccactgccaaggaagggctagaactaagcatccagaacatcaca
tcccacagcctcctggtggcctggaggagggtaccaggcgctaatggctaccgcgtaaca
tggcgggacctcattggcgggcaagtacagcagcacaacctgagccctgaacagggttca
gtatttctagatcacttggagcctggcacggactatgaggtgactgtgagagccctattt
gaccacagtgtggggcctgccacttctctgactacccgcaccgcctcttctgttgagcaa
acactgcatcccgtcatcttgagccctacatccatcctcctttcctggaacttggtgcct
gaggcccgtggctaccgcttggagtggcgtcgtgagagtggcttggaaccaccgcagaaa
gtggaactgccccctgatgtgacgcgccatcagctggatgggttgcagccaggcactgag
taccgcctcacactatacactctgctggagggccgtgaggtggccactcctgccatggtg
gttcctacagaactagagcagctggtgaggccggtgatgaatttacaagccacagaactg
cctgggcagcgggtgcgagtgtcttggaacccagtccccgaggccaccaagtaccgtgtc
attgttcgcactcagggggccaagcgcactcagctcattcctgggagccagacaaccttt
gacttagatgatgttcgacctgggattagctacacagtgcaagtgtctgctctagtgggc
actcacgagggtgatgctagcatcctaacgatccacagagatccagaagccccacttgtt
gtcccaggactgcaggttgtggcatcagatgcaacaagaattagggtggcctggggactt
gtgcctggagccagtggatttctgatcagctggaggataggcagtggttcagagtccagc
cagatgatgaccgcagattctactgtcacagacatcctggggctgcagcctggcacctct
tatcaagtatctgtctcagcacttagagggagagaaaaggggccccctgtggtcatcgtg
gctcgaactgatccactgggcccagtgaggagagtccacttgactcaggctggcagctca
tctgtcagcatcacctggactggggttcctggtgccacaggatacaaggtttcctggcac
tcaggccatgatccagagaaatctcagttcgtttctggagatgccacggtggctgaaata
gaggggctggagccagacacggagtacatagtgcgtgtgagggcccatgtagctggtgtg
gatggagcccctgcttctgtggttgtgaggactgctcctgagcctgtgggcagtgtgtca
aaactgcaaatccttaatgcttccagtgatgttctacgggtcacttgggtaggagtccct
ggggccacatcctatagactggagtggggacgtagtgaaggtggccctatgagacaacag
aaggtcccaggaaacaaagactctgcagagatacgagatctcgaaggtggaatcagctac
tctgtgagagtgacagcgcttgttggagaccgagagggtgcaccggtgtccattgtcgtc
accacaccgcctgaggcaccagcccttctggagactcttcaagtagtgcagagtggggag
cactccctgaggctgcgctgggagcgagtacctggagcaccaggcttccatctccattgg
caacccgagggtggcgaggaacagtccctgtccttgggacctgagtctaacagctacaac
ctcgttggattggagccagcaacaaagtaccaagtatggctgagtgtgccgggccagact
ggagaaggtccccctaggaaggtgactgcgtacactgagccctctcacatgccaagcact
caactacgtgtggtggacacctctattgattcagtgactttgacctggaccccagtgtct
agggcatccggttatatcttgtcctggcggccactccgaggaactggccaggaagtgtct
gggaccccacagacactgccagggatggcaagctcccacagagtgacaggcctggaacct
ggtatttcctatgttttctctctgacacctatccaaagcggtgtacgaggttctgagatc
tctgtcacccaaaagccagcgtgtccccgtggccggatggacgtggtgttcctgttgcat
gccactcgagacaatgctcacaatgcagaggctgtgaggagggtcctggaaaggcttgtg
tctgcactcgggcctcttggtccacaggctgctcaggttggcctgctgacttacagccac
cggccctccccactgttcccactgaatagttcccatgatcttggcgtcatcttgcaaaag
atccgtgacatcccctatgtggacccaagtggtaacaacctcggcacagctgtgaccaca
gctcataggtacttcttagcatccaatgctcctggtcgccgtcagcaagtgccaggcgtg
atggtcctgttagtggatgagcctctgagaggggacatattcagccccattcgtgaggcc
caggcttctgggctcaaggtgatggcgctgagtttggtgggagctgacccagagcagctg
cgtcgcttggcaccaggcatggaccccatccagaacttctttgctgtggataatggccca
ggcttggaccgagcagtcagtgatctggctgtagccctgtgtcaggcagctgtgaccata
cagccacaaacagagccttgtgctgtgcactgtcctaaaggccagaagggggagcctgga
gtgccgggactgcaaggacaggctggacctcctggtccccccggtctcccgggcaggacc
ggtgctccaggcccgcaaggtcctcctggaagtacccaagcaaaaggcgagaggggcttt
cctggcccagaagggcctccaggcagtcctggcctccctggtgtttctgggtctcctggc
attaagggctccccagggtggcctggccctcgtggggaacagggagagcgagggcctcaa
ggcccaaagggggagccgggggagcctgggcaaatcagtggaggtggagggccagggctt
cccggaaagaaaggggaccctggaccttcgggcccccctggacctcgtggccctttgggg
gacccaggaccccgtggccccccagggcttcctggaacatcagtgaagggtgacaaaggt
gatcgtggggaacggggtcccccgggaccaggaattggtgccagtggacaaggtgaccct
ggactcccggggcttcctggaagccctggaccccaaggcccaattggccgaactggagag
aagggagagaagggtgactgtgaggatggaggcccaggcctcccgggaccacctggggcc
ccaggggaaccgggcctgcggggagctcctggaattactgggcccaaaggtgatcgggga
ctgacagggacccccggcgagcctggagtaaagggtgaacggggacatcctggtcccgtg
ggatcccaggggctccccggggctgctggatatcctggagcgcagggtcctgaggggcca
ccaggacccactggccgccgaggagaaaagggagagcctggtcgccctggggatcctgca
gtgggtcctggtggtgctggagccaaaggagaaaagggagaggctgggctccctgggccc
agaggagcttcgggaagcaaaggagagcagggtgcacctgggttggctcttcctggagac
cctggccccaaaggagaccctggagataggggtcccactggcctcactggcaggacagga
cccacaggtgactcagggcctcctggagagaaaggagagcctgggcgacctggtccccca
ggacccgttggcccccgaggaagagatggtgaagctggagagaaaggtgacgagggtatc
tcgggtgagccaggtttgcctggaaaagcaggtgaacgtggcctccggggggcacctggg
ccccgggggcctgtgggtgagaagggtgaccagggagatcctggagaagatggacggaat
ggcagccccggatcatctggacccaagggtgaccgtggggagcctggtcccccaggtccc
cctggacggctggtggatgcaggcattgactccagagacaagggagagcctggacaagaa
ggtccccgaggacccaagggtgaccctggcccccctggagcctctggagaaaggggcatt
gatgggcttcggggacccccaggcccacagggagacccaggtgtccgaggccctgcagga
gacaagggtgatcggggacccccagggctggatggccggagtgggctggatgggaaacca
ggagctcctggccccccagggctacacggtgcttcaggcaaagctggggaccctgggaga
gatggtcttccaggccttcgaggagaacatggcccccctggtctccctggccctcctggg
gttccgggaaaggcaggcgaagatggcaaaccaggcctgaatgggaaaaacggagacccc
ggagaccctggagaagatggaaggaagggagaaaagggagattcaggcgcccctggaaga
gaaggtcctgatggtcccaagggtgaacgtggagctcctgggaatcctggactccagggt
cctccgggtctcccggggcaggtcggtcctcctggccagggtttccctggtgtcccagga
attatgggtcctaagggtgaccgtggagagactggatccaaaggggaacagggccttcct
ggagaacgtggcctacgaggagaacctgggggcttgccgaatgcagagcgcttgctggaa
actgctggcatcaaggtgtccgccctgcgggagattgtggacacctgggatgagagttct
ggtagcttcctgccggtgccagagcggagacctggccctaagggggaccctggtgaccga
ggccctccgggcaaggagggccccatcggctttcctggagagcgtgggctgaagggagag
cgcggagaccctggccctcaggggcctcctggcctggcccttggtgagaggggcccacct
ggcccgcctggccttgctggggaacctggaaagcctggcattccaggactcccaggccgg
gctggtggttcaggggaagcaggaaggccaggagagaggggagaaaggggagagaaagga
gaacgtggggaacagggcagagatggccttcccggcctccctggaccacctggacctcct
ggccccaaggtggccattgaagagccaggccctggacccgctagagaacaaggacctcct
ggactcaagggtgcgaagggggagccaggcagtgatggtgaccctggacctaaaggagac
aggggtgtaccaggcatcaaaggagatgcaggagagcctggaaagaggggacaggatggc
aacccaggtctaccaggagagcgtggtgtggctgggcctgaagggaagccgggtcttcag
ggcccaagggggacctctggcccagtgggtagccatggagaccctggaccacctggtgcc
ccgggtcttgctggccctgcaggaccccaggggccttctggcctgaagggggaacctgga
gagacaggacccccaggacggggtctgcctggacctactggagctgtgggacttcctgga
cctcctggcccttccggcctcgtgggtccacaaggctctccaggtttgcctggacaagtg
ggtgagacagggaagccaggccctccaggccgtgacggtagcagtggaaaggacggagag
aggggagttcctggtgtgccggggtcaccaggtctgccaggccctgttggacctaaagga
gaacctgggcctgtgggggcccctggacaggtggtagtcgggccccctggagcaaagggt
gagaagggagccccaggagaccttgctggagccctgctgggtgagccgggagccaaaggt
gaccgaggactgcccggaccacggggtgaaaagggtgaagctggccgtgcaggagagcct
ggagaccctggggaagatggtcaaaaaggagctccaggactcaaaggtctcaagggtgag
ccaggcattggggttcagggcccccctggaccaagtggtcctccaggtatgaagggagac
ttgggcccccctggtgcccctggtgctcctggtgttgttgggttccctggtcagacagga
cctcgaggagagacgggccagccagggcctgttggagagcggggtctggcaggccctcca
gggagagaaggtgccccaggtcccttgggaccacctggaccaccagggtcagcgggagca
cctggcacctctggactcaaaggggacaagggagacccaggaacagggccgccggggccc
cgaggcgagcgtggtgaaccaggtgtccggggtgaagatggccaccctggccaggaagga
cctcgtggagtcatggggccccctggcagccggggagagcgaggagagaagggcgatgct
ggagctgcagggctcaagggtgacaagggtgactcagctgtgattgagggacctcccggg
ctacgaggtgccaaaggggatatgggtgaacgagggcctcggggcatagatggtgacaaa
ggacctcggggagaaagtgggaatcctggagacaagggctccaaaggagagcctggtgac
aaaggctcagctggatcaattggaatccgaggactcacaggacccaagggagagccaggt
gctgcagggatccccggtgagccgggagccccaggaaaggatggagccccaggtttccga
ggagacaaaggagacattggcttcacaggtcccaggggcctcaagggtgaaagaggaata
aagggaacctgtggccttaatggagaaaaaggagataagggagaagctggttttcctggt
cgccctgggttggcaggaaagaaaggagacatgggggagcctggtatgccgggtcagtct
ggggctcctgggaaagagggcctgatcggtcccaagggtgacagaggctttgatgggcag
tcaggacccaagggtgaccaaggcgaaaaaggggagaggggacccccaggagttgggggc
tccccaggtgccagaggaaatgatggctctagtggtcccccagggccacctggtggtgtt
ggtcccaagggacctgaagggcttcagggtcagaagggtgagcgaggtcctcctggagag
agtgttgtgggggctcctggggctcctggcacccctggtgagagaggggagcaggggcga
ccaggacctgctggcccccgtggcgagaagggagcagctgcgctgactgaggatgacatt
cggggctttgtgcgtcaggagatgagtcagcattgtgcctgccagggccagtttattgcg
tccggatcacgacccctccccggttatgcttcggatacagctggcccccagctccaccgt
gttcctgtactccgggtctcccatgttgaggaggaagcacacctcaccctacctgcaggc
caagtgccccctgaagatgatgacgatttctctgagtactccgtgtattctgtggaggac
taccaggaccctgaagttccatgggatggtgatgccgagattaagggctgggaccagaga
ggttcagatctctgctccctaccactggatgagggctcctgtactgcctataccctgcgc
tggtaccatcgagctgtgcctggtggcacagcctgtcatccctttgtctacggtggctgc
agagggaatgccaatcgttttggaacccgtgaggcgtgtgagcgccgctgcccaccccaa
ggggtccacagccagaaaacaggtgctgcctag
DBGET
integrated database retrieval system
