Mastomys coucha (southern multimammate mouse): 116074556
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Entry
116074556 CDS
T07224
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116074556 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcoc00536
]
116074556 (Col13a1)
Glycosaminoglycan binding proteins [BR:
mcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116074556 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116074556
NCBI-ProteinID:
XP_031203057
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MVAERARKTAASGNRGPGELGAPGPGTVALAEQCARLPSPGCCGLLALALFSLALSLLAH
FRTAELQARVLRLEAERGEQQMEKAILGRVNQLLDEKLKFYSRRRREAPKMSPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGF
PGPIGLDGRPGHPGPKGETGLVGPRGQPGPQGQKGEKGQCEEYPHRLLPLLNSVRLAPPP
VIKRRTFQGEQSQAGIQGPPGPPGPPGPSGPLGHPGLPGPIGPPGLPGPPGSKGDPGIQG
YHGRKGERGMPGMPGKHGAKGVPGIAVAGMKGEPGTPGAKGEKGAAGSPGLLGQKGEKGD
AGNVIGGGRGEPGPPGLPGPPGPKGEAGIDGQAGPPGQQGDKGQPGAAGEQGPAGPKGSK
GEPGKGEMVDYNGSINEALQEIRTLALMGPPGLPGQTGPPGPPGTPGQRGEIGLPGPPGH
DGDKGPRGKPGDVGPAGPQGPPGKDGPPGMKGEVGPPGSPGEKGETGPAGPQGLDGPTGE
KGEPGDEGRPGAAGLPGPIGLPGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGVP
GPKGEAGLDGSRGEKGSQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGER
GSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLG
EDGLPVQGCWNK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggagcgcgcccgcaaaacggcagcctccggcaaccgcgggcctggggagctg
ggcgcgccggggcccgggacagtagcgctggctgagcagtgcgctaggctgccgagcccc
gggtgctgcggactgctggctctggcgctgttctcgctggcgctcagcctgctcgcccac
tttcggaccgccgagctgcaggcccgagtgctgcgcttggaagcggagcgcggggagcag
cagatggagaaagctattttgggacgagtcaaccaactgctggacgagaaattgaagttc
tactcgcgcaggcgccgggaggccccgaagatgtctccaggatgtaactgcccgccagga
cctccaggtcccactggaagacctgggctcccaggggacaagggtgctatcgggatgcct
ggacgcgtgggtgtcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggatg
tccatcatcgggcctcgaggcccccctggccagcctggtacccggggcttccctggattc
ccgggtcccattggtcttgacggcaggccgggccaccccggacctaaaggggagacgggc
ctggtgggtcctcgaggacaaccgggacctcagggacaaaagggagaaaagggtcagtgt
gaagagtacccacaccggctgttgcctctcctcaattcagtgcggctggctccaccccca
gtcattaaaaggcggacctttcagggggaacaaagccaggctggcatccaaggccctcca
gggccaccgggccccccaggaccaagcggccctctgggacacccaggactgccagggcct
atagggccacctggtttacccgggcctcccggatcaaagggagacccagggatccagggc
tatcatggccgcaagggagagcggggcatgccgggaatgccaggcaagcacggagccaag
ggggttcctgggattgccgtggctggaatgaagggtgagccggggacaccaggagccaag
ggtgagaagggtgcagcaggctcccctggcctcctggggcagaagggagaaaaaggtgat
gcaggcaatgtcattggaggaggcagaggggagcctggccccccggggctccctgggccc
cctgggccaaagggagaagctggtattgatggccaggctgggccaccaggacagcaagga
gacaaggggcagccaggagcagctggggaacagggacccgctggtccgaagggttccaag
ggtgaacccggcaagggagagatggtggattataatggcagcatcaacgaggcgcttcag
gagatcaggacgttggccttaatggggcctcctggtcttcctggacaaacaggcccaccc
ggacctccagggactccaggccaaaggggggagattggactgccaggccctccaggacac
gatggggacaaggggcctcgaggaaaaccaggagatgtggggcccgctggtcctcaagga
cccccaggaaaggacgggcctccgggaatgaagggagaggtcggacccccaggaagtcca
ggggagaaaggggagacaggaccagcaggcccccagggtctagacggcccaactggggag
aaaggagaaccaggtgacgaagggaggcctggagcggcaggattgcctgggcccatcggg
ctcccgggattcacaggagagaaaggcgaagcaggggaaaaaggcgacccaggagcagag
gttcctgggccaccagggccagagggtcccccaggacctccgggcctccaaggtgttcct
ggaccaaagggagaagcaggcctagatggcagtagaggagagaagggctcccagggagaa
aaaggagaccggggccctctgggattgcctggagcttcaggtttggacggcaggcctggg
ccaccgggtactccaggaccaatcggggttccaggcccagccggaccaaagggtgaaagg
ggcagcaaaggtgacccagggatgacgggaccaacaggagcagctgggctgcctggttta
catggaccacccggggacaaaggaaaccggggggagaggggaaagaagggctctagaggg
cctaaaggggacaagggggaccaaggagcacctggactagacgccccgtgcccgctggga
gaagatggcttaccggtccaaggctgctggaacaagtga
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integrated database retrieval system
