Mastomys coucha (southern multimammate mouse): 116074586
Help
Entry
116074586 CDS
T07224
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116074586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116074586
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116074586
Spliceosome [BR:
mcoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116074586
Complex C
U4/U6.U5 tri-SnRNP related factors
116074586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
SRP54
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
116074586
NCBI-ProteinID:
XP_031203109
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MATPVDLEPWVQEELHSVLGPSKGYIARFLIATAQHCSSPEEFVQQLRNTNTLDFCGPDF
ALRLWSKVPGKAVVEKPARVAEQEARALLEKNRSYKLLEDCNSESGEEVVGRDGSSLQKK
RKRQKQLQKKHQEEEEESVRKKTRGSKSPREEAQKRLKMAEEDRKAIVPELRKKSRREYL
AKRAREKLEDLEAELADEEVLFGDVELSLHERRELKYKRRVRDLARKYRAAGQQEKLEAT
NRYHMPKETRGQPARAVDIVEEESGAPGEEQQRWEEAQLGAASLKFGARDAAAQEPKYQL
VLEEEETIEFVLAAQLQGDEEPSSGPPLSAQAQQKESIRAERRSLPVFPFREELLTAIAN
HQVLIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLG
NEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFG
LIKDVARFRPELKVLVASATLDTARFSAFFDNAPVFRIPGRRFPVDIFYTKAPEADYLEA
CVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLRDRCRRLGSKIRELLVLPIYANLPSH
MQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTITPC
SKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEDTTVPEIQRTSLGNLVLLLKSLGIHD
LVHFDFLDPPPYETLVLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKY
SCSEEILTVAAMLSVNNSIFYRPKDKAVHADNARVNFFLPGGDHLVLLNVYTQWAESGYS
SQWCYENFVQFRSMRRARDVREQLQGLLERVQVGLTSCQGDYVCVRKAITSGYFYHIARL
TPSGYRTVKQQHTVFIHPNSSLFEQQPLPRCLLYHELVFTTKEFMRQILEIESSWLLEVA
PHFYKAKELEDPRTKKMPKTVGKTREELG
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcccgtggatctggagccgtgggtgcaggaggagctgcactcggtgctgggg
ccaagcaaggggtacattgcgcgcttcctgatcgccacagcgcagcactgctcctccccc
gaggagtttgtgcagcagctgcgcaacaccaacaccctggacttctgcgggcctgacttt
gctctgaggctctggagcaaggtcccagggaaggctgtggtggaaaagccagctcgggta
gctgagcaagaggcccgagccctgttggagaagaaccgttcttataagttgttggaagac
tgcaacagcgagagtggcgaggaggtagtgggcagggacgggagcagcctccagaagaag
cggaagagacagaaacaactccagaagaaacatcaggaagaggaggaagagtcagtcagg
aagaagactagggggagtaaatcgcccagggaggaggctcagaagcgactcaagatggct
gaggaagaccggaaagccattgtccctgagctccggaagaagtctcgtcgggaatacctg
gcgaagagggcgcgggaaaagctggaggacctggaggcggaactggctgacgaggaggtc
ctgtttggggacgtggagctgagcctccatgagcgcagggagctcaagtataagcgacgc
gtgcgggacctggctcggaagtaccgggcagcgggccagcaggagaagctggaggccact
aatcgctaccacatgcccaaggagacccgaggacagccagctcgagctgtggacatcgtc
gaggaggaatcgggtgctccgggagaggagcagcagcgctgggaggaggcccagctgggt
gctgcgtcccttaagtttggggcccgagatgctgctgcacaggagcccaagtaccagctg
gtgctggaggaggaggagaccatcgagtttgtccttgcagctcagctccagggtgacgag
gagccgtcgtcaggcccacctctgtcagcccaggcccagcagaaggagtccatccgggct
gagcgccgcagcctgccagtgttccccttccgagaggagctcctgaccgccattgccaac
caccaggtcctcatcatcgaaggcgagaccggctctgggaagactacgcagatcccacag
tacctctttgaggagggttacacaaagaagggcatgaagattgcttgcacccagcctcgg
agagtggcggccatgagtgtggcagcccgagtggcccgggagatgggtgtgaagcttggg
aatgaggtgggctacagcatccggtttgaggactgcacatcagagcgaacagttctccgc
tacatgacagacggaatgctactccgggagttcctctctgagcctgaccttgcaagttac
agtgtggtgatggtggatgaagctcacgagcggaccttgcacacagacattctctttgga
ttgatcaaagatgttgctagattccgaccggagctcaaggtcctggtggcttcagccaca
ctggatactgcccgcttttctgccttctttgataacgcccctgtcttccgaatccctgga
cgcaggtttccagttgacatcttctacaccaaggccccagaggctgactacctggaagcc
tgtgttgtgtcagtgctgcagatccatgtgactcagccccctggggatatactggtgttc
ctgacagggcaggaggagatcgaggctgcctgtgagatgctccgggaccgctgccgcaga
ctgggctccaagatccgggagctcctggtgctgcccatttatgccaacctgccgtcacac
atgcaggctcgcatcttccagcccacaccccctggggcccgaaaggtggttgtggcaaca
aacattgcagaaacttccctcaccatcgaaggcatcatttatgtgctggatccagggttc
tgtaagcagaagagctacaaccctcgcacaggcatggagtccctaacgatcacaccctgc
agcaaggcttctgccaatcagcgggctggccgcgcaggccgagtggctgcagggaagtgc
ttccgcctgtacacagcctgggcctatcagcatgagctggaggacaccacagttcctgag
atccagaggacaagcctgggcaaccttgtgctactgctaaagagcttaggcatccacgac
ctggtacactttgacttcttggaccctccaccgtacgagaccctggtgctggctctggaa
caactttatgcccttggcgccctcaaccacctaggagaactcaccacatctggtcgaaag
atggcagagctgcctgtggatcccatgctgtctaaaatgatcctggcctccgagaagtac
agctgttctgaagagatcctgaccgtggctgctatgctgtctgtcaacaattccatcttc
tacaggcccaaggataaggccgtccatgccgacaatgcccgtgtcaacttcttcctccct
ggtggggaccacctggttctgctaaatgtgtacacacagtgggctgagagtggctactct
tcccagtggtgctatgaaaacttcgtacagttcagatccatgcgccgagcccgggatgtg
cgggaacagctgcaggggctcttggagcgtgtgcaagttggcttgacttcttgccaaggt
gactacgtttgtgtgcgaaaggccatcacttcgggttatttttaccacatagcgaggctg
actccaagtggctaccgcacagtgaagcagcaacacacagtgtttattcatcccaactcc
tctctctttgaacaacagccactaccacgctgcttgctctaccatgagcttgtctttacc
acaaaggaattcatgagacagatattggagattgaaagcagctggcttttggaagtggct
ccccacttctataaggccaaggagctagaagatccccgtaccaagaaaatgcctaaaaca
gttggcaagactcgagaagagctgggctag
DBGET
integrated database retrieval system
