Mastomys coucha (southern multimammate mouse): 116074610
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Entry
116074610 CDS
T07224
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013
Nucleocytoplasmic transport
mcoc03015
mRNA surveillance pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116074610 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
116074610 (Ddx39b)
03015 mRNA surveillance pathway
116074610 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116074610 (Ddx39b)
03041 Spliceosome [BR:
mcoc03041
]
116074610 (Ddx39b)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116074610 (Ddx39b)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116074610 (Ddx39b)
Spliceosome [BR:
mcoc03041
]
Complex C
Other components
EJC/TREX
116074610 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116074610 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116074610
NCBI-ProteinID:
XP_031203161
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagacgatgaggtggagaca
gccgctggggccgatgggaccgaagctcccgccaagaaagatgtcaagggctcctacgtc
tccatccacagctcgggctttcgagatttcctcctcaagccagagctgctccgggccatc
gttgactgtggctttgagcatccatcagaggtccagcatgagtgcatccctcaggccatt
ctggggatggacgtcctgtgccaggccaagtcaggcatgggaaaaacagcagtgtttgtc
ctggccacactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggctttccagatcagcaaggaatatgagcgcttctcaaagtacatg
ccgaatgtcaaggtggcagtgttttttggcggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacacattgtcgtggggactcctggccgaattctagccctggct
cgaaataagagcctgaatctgaaacacattaaacactttatcttggatgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcccagcttctagtggagcagaactttccagccattgctatccaccgtggg
atgccccaggaggagaggctctctcggtatcagcagttcaaggattttcagcggaggatt
cttgtggctaccaacctatttggccgaggcatggacattgagcgtgtgaacatcgctttc
aactatgacatgcccgaggactcggacacctacctgcacagggtggccagagcgggccgc
tttggtaccaagggcttggccatcacatttgtgtcagacgagaatgatgccaagatcctc
aatgacgtgcaggaccgtttcgaggtcaacatcagcgagctgcctgacgagatcgacatt
tcctcctacattgagcagacacggtag
DBGET
integrated database retrieval system
