Mastomys coucha (southern multimammate mouse): 116075379
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Entry
116075379 CDS
T07224
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116075379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116075379
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116075379
Spliceosome [BR:
mcoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116075379
Complex C
U4/U6.U5 tri-SnRNP related factors
116075379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
Cas3-like_C_2
JAB
Motif
Other DBs
NCBI-GeneID:
116075379
NCBI-ProteinID:
XP_031204365
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MATPGELERWVEEELHSVLGLSERHVAQFLIGTAQRCVSAEEFVQRLRDTDTLDLGGPAR
DFALRLWSKVPRKTVVEKPARVAEREARALLEKNRSYKLLEDSDSESGEEAVGRDGSSLQ
KKRKRRKHLRKKHQEEEDEEEEEEEPIRKKSGGSKSPTEEKPASEDEWERTERERLQDLE
ERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLA
KREREKLEDLEAELADEEVLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATN
RYHMPKETRGQPARAVDVVEEESGAPGEEQRRWEEAQLGAASLKFGARDAAAQEPKYQLV
LEEEETIEFVRATQLQGDEXERKKESGMVTRRLLKPFDGDLTISVALPQEPSQGVTLLSF
XGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTD
GMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTA
RFSAFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQ
EEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAE
TSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLY
TAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLVHFDFLDPPPYETLLLALEQLYA
LGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPK
DKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQL
EGLLERVEVGLTSCQGDYVRVRKAITSGYFYHIARLTRSGYRTVKQQQTVFIHPNSSLFE
QQPPPRWLLYHELVFTTKEFMRQVRDYCLLGWVETGETICWLSSYERDCHGDMKG
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccgggggagctggagcggtgggtggaggaggagctgcactcggtgctgggg
ctgagcgagcggcacgtcgcgcagttcctgatcggcaccgcgcagcgctgcgtctccgcc
gaggagtttgtgcagcgcctgcgcgacaccgacaccctggacctcggcgggccggcgcgg
gacttcgcgctgaggctctggagcaaggtcccacggaagactgtggtggaaaagccagct
cgggtagctgagcgagaggcccgagccctgttggagaagaaccgttcttataagttgttg
gaagacagcgacagcgagagtggtgaggaggcagtgggcagggacgggagcagcctccag
aagaagagaaagagaaggaaacacctccgaaagaaacaccaggaagaggaggacgaggag
gaggaggaggaagagccaatcaggaagaagtcaggggggagtaaatcgcccacggaggag
aagccagcctcagaggatgagtgggagaggacggagcgtgagcgtctccaggacttggag
gaacgggatgcctttgcagagcgggttcggcaacgcgacaaggaccggacccggaatgtc
ctggaacggtcagataagaaggcttatgaagaggctcagaagcgactcaagatggctgag
gaagaccggaaagccatggtccctgagctccgtaagaagtctcgtcgggaataccttgca
aagcgggagcgggaaaaactggaggacctggaggcagaactggctgacgaggaggtcctg
tttggggacgtggagctgagccgccatgagcgcagggagctcaaatataagcgacgcgtg
cgggacctggctagggagtaccgggcagcgggcgagcaggagaagctggaggccactaat
cgctaccacatgcccaaggagacccgaggacagccagctcgagctgtggacgtcgtcgag
gaggaatcgggtgctccaggagaggagcagcggcgctgggaggaggcccagctgggtgct
gcgtcccttaagtttggggcccgagatgctgctgcacaggagcccaagtaccagctggtg
ctggaggaggaggagaccatcgagtttgtccgtgcgactcagctccagggtgatgagngt
gagaggaagaaagagtctgggatggtgactcgaaggcttctaaagccctttgatggggac
ctcaccatctctgtcgcccttcctcaggagccatcccaaggagtaacccttctctccttt
tagggttacacaaagaagggtatgaagattgcttgcacccagcctcggagagtggcggcc
atgagtgtagcagcccgagtggcccgggagatgggtgtgaagcttgggaatgaggtggga
tacagcatccggtttgaggactgcacatcagagcgaacagttctccgctacatgacagac
ggaatgctactccgggagttcctctctgagcctgaccttgcaagttacagtgtggtgatg
gtggatgaagctcatgagcggaccttgcacacagacattctctttggattgatcaaagat
gttgctagattccgaccggagctcaaggtcctggtggcttcagccacactggatactgcc
cgtttttctgccttctttgatgacgcccctgtcttccgtatccctggacgcaggtttcca
gttgacatcttctataccaaggccccagaggctgactacctggaagcctgtgttgtgtca
gtgctgcagatccatgtgactcagccccctggggatatactggtgttcctgacaggacag
gaggagatcgaggctgcctgtgagatgctccaggaccgctgccgcagactgggctccaag
atccgggagctcctggtgctgcccatttatgccaacctgccctcagacatgcaggctcgc
atcttccagcccacaccccctggggcccgaaaggtggttgtggcaacaaacattgcagaa
acttccctcaccatcgaaggcatcatttacgtgctggatccagggttctgcaagcagaag
agctacaaccctcgcacaggcatggagtccctaacggtcacaccctgcagcaaggcttca
gccaatcagcgtgctggccgagcaggccgagtggctgcagggaagtgcttccgcctgtac
acagcctgggcctatcagcatgagctggaggagaccacagttcctgagatccagaggaca
agcctgggcaacgttgtgctgctgctaaagagcttaggcatccacgacctggtgcacttt
gacttcttggaccctccaccgtacgagaccctgctgctggctctggaacaactttatgcc
cttggcgccctcaaccaccttggagaactcaccacgtctggtcgaaagatggcagagctg
cctgtggatcccatgctgtctaaaatgatcctggcctccgagaagtacagctgttccgaa
gagatcctgaccgtggctgctatgctgtctgtcaacaattccatcttctaccggcccaag
gataaggtcgtccatgccgacaatgcccgtgtcaacttcttcctccctggtggggaccac
ctggttctgctaaatgtgtacacacagtgggctgagagtggctactcttcccagtggtgc
tatgaaaacttcgtacagttcagatccatgcgccgagcccgggatgtgcgggaacagctg
gaggggctcttggagcgtgtggaagttggcttgacttcttgccaaggtgactacgttcgt
gtgcgaaaggccatcacttcgggttatttttaccacatagcaaggctgactcggagtggc
taccgcacagtgaagcagcagcagacagtgtttattcatcccaactcctctctctttgaa
caacagccaccaccacgctggttgctctaccatgagcttgtctttaccacaaaggaattc
atgagacaggtaagggactattgcttgctcggatgggtggagactggggagacaatatgc
tggctcagttcatatgaaagggactgtcatggagacatgaagggttag
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