Mastomys coucha (southern multimammate mouse): 116076561
Help
Entry
116076561 CDS
T07224
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03082
ATP-dependent chromatin remodeling
mcoc04714
Thermogenesis
mcoc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116076561 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116076561 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116076561 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116076561 (Smarcc2)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116076561 (Smarcc2)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116076561 (Smarcc2)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116076561 (Smarcc2)
PBAF complex
116076561 (Smarcc2)
GBAF(ncBAF) complex
116076561 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
116076561
NCBI-ProteinID:
XP_031206257
LinkDB
All DBs
Position
Unknown
AA seq
1244 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIVKRHQGTISEDKSNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKPPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQSSASQQMLNFPDKGKEKP
ADMQNFGLRTDMYTKKSVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPE
RIEESGTEEARPEGQAADEKKEPKEPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKE
SEKSDTDPIVEPEKDKEPTEGQEEVLKEVAEPEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQPPTLPPGSQPIPPTGAAGPPTVHGLAVP
PAAVASAPPGSGGPPGSLGPSEQIGQAGTTAGPQQPQQAAAPQPGAVPPGVPPLGPHGPS
PFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPSAAPSVIPFGSLADSISINL
PPPPNLHGHHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQS
PAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtacatacag
gcagagccaccaaccaacaagtccctgtccagcctggtggtgcagttgcttcagtttcag
gaagaggtttttggcaaacatgtcagcaacgcaccgcttactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggatccctgtgccatattcttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtacagaataattgcctgtctcgacct
aacattttcctgtgcccagaaattgagcccaaactgctagggaaattaaaagacattgtt
aagagacaccagggaaccatctctgaggataagagcaatgcctcccatgttgtgtatcct
gtcccagggaacctagaagaagaggaatgggttcggccagtcatgaagagggataaacaa
gttcttctgcactggggctactatcctgacagctatgacacatggatcccagcaagtgaa
atcgaagcatctgtggaggacgctccaactcccgagaaacctaggaaggtccatgcaaag
tggatccttgacactgacacgttcaatgagtggatgaatgaggaagactatgaagtcagt
gatgacaagagcccagtctcccgcagaaagaagatctcagccaagacgctgacggatgag
gtgaacagcccggattcagacagacgggacaagaagggggggaactataagaagaggaag
cgttctccttctccttcgcccaccccagaggctaagaagaaaaatgctaagaaaggaccc
tcaacaccttataccaagtcaaagcgaggccacagagaagaggagcaagaagacctgaca
aaagacatggatgaaccctctccagtcccaaacgtggaagaggtgacactccccaaaaca
gttaacactaaaaaggactctgagtcagccccagtcaaaggtggcaccatgactgacctg
gatgaacaggacgatgaaagcatggagaccacgggcaaggatgaggatgagaacagcacg
gggaacaaaggggagcagaccaagaacccagacctgcacgaggacaacgtgaccgagcag
acccaccacatcatcatccccagctatgctgcctggtttgactacaacagcgtccatgcc
attgaacggagggctcttcctgagttctttaatggcaagaacaagtccaagactccagag
atctacctggcgtatcggaacttcatgatcgacacttaccgactcaatccccaagagtat
ctaacatccactgcttgtcggcggaacttggcgggtgatgtctgcgctatcatgagggtc
cacgccttcctggaacagtggggtctgattaactaccaggtagatgcggagagtcggcca
accccaatggggcctccacccacctctcacttccatgtcttggctgacacaccatcaggg
ctggttcctcttcagccgaagcccccacagggccgccaggttgatgctgataccaaggct
gggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagagctctgcctcccaacaaatgctgaacttccctgataaaggcaaggagaaacca
gcagacatgcagaactttgggctacgcacagacatgtacacaaagaagagcgtcccgtcc
aagagcaaagctgcagctagtgccactcgggaatggacagagcaggagacactgctgctc
ctggaggctctggaaatgtacaaggacgactggaacaaagtgtctgagcatgtgggaagc
cgcacgcaggatgaatgcatcttgcattttcttcgccttcccattgaagacccatacctg
gaggactcagaggcctctctaggccctctggcttaccagcccatccctttcagtcagtca
ggcaaccctgttatgagcactgttgctttcctggcctctgtcgttgatccccgagttgcc
tctgctgctgcgaagtcagccctagaggagttctcaaaaatgaaggaagaggtgcccaca
gccttggtggaagcccatgtgcgcaaggtggaagaagcagccaaagtcacaggcaaggcc
gacccagcctttggtctggagagtagcggcatcgcagggactgcctctgatgagcctgag
cgcattgaggaaagcgggactgaggaggcacggccagagggccaggcagcagatgagaag
aaagaacctaaggaaccacgggaaggagggggtgctgtagaggaagaagcaaaggaggaa
ataagtgaggttcccaagaaagatgaagagaaagggaaagaaggtgacagtgagaaggag
tcagagaagagtgacacggacccgatagttgagcctgagaaagacaaggagccaacggaa
gggcaggaggaagtgctaaaggaagtggcggagccagagggggaaaggaaaaccaaggtg
gagcgtgacattggtgaaggcaacctgtcgacagctgctgccgcagccctggccgctgct
gctgtcaaggccaagcacttggctgcagttgaggagaggaagatcaagtctttggtggct
ctgctggtggagacccaaatgaagaaactagaaatcaaactccgacattttgaggagctg
gagacgataatggacagggagcgagaggcgctggaatatcagaggcagcagctcctggcc
gaccgacaagccttccacatggagcagctgaagtatgcagagatgagagcccggcagcaa
cacttccagcagatgcaccagcagcagcagcagcagccaccaaccctgcccccaggctcc
cagcccatacctcccaccggggctgctggaccacctacagtccatggtctagctgtgcct
ccagccgctgtggcctctgctcctcctggcagtgggggccctcctggaagcttgggccct
tctgaacagatcgggcaggcagggacaactgcagggccacagcagccacaacaagctgca
gcccctcagcctggggcagtcccaccaggggtacccccccttggaccccatggcccctca
ccgttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
tctgctgctccatccgtcatcccattcggtagtctagctgactccattagtattaacctt
ccccctcctcctaacctgcatgggcatcaccaccatctcccgtttgccccgggcactatc
cccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgacc
accaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagc
cctgccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagac
ccaggcaccccgctgcctccagaccctacagctccgagcccaggcacagtcacccccgtg
ccacctccacagtga
DBGET
integrated database retrieval system
