Mastomys coucha (southern multimammate mouse): 116076568
Help
Entry
116076568 CDS
T07224
Symbol
Utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mcoc03009
]
116076568 (Utp20)
Ribosome biogenesis [BR:
mcoc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
116076568 (Utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
116076568
NCBI-ProteinID:
XP_031206273
LinkDB
All DBs
Position
Unknown
AA seq
2788 aa
AA seq
DB search
MKPKPLSHKTENTYRFLTFAERLGNVNIDIIHRIDRTASYDEDVETYFFEALLKWRELNL
TEHFGKFYKEVIDKCQSFNQLVYHQNEIVHSLKTHLQVRNSFAYQPLLDLVVQLARDLQT
DFYPHFEDFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSKIYSLYSTLLAH
KKLHIRNFAAESFTFLMRKVSDKNALFNLMFLDLNEHPEKVEGVGQLLFEMCKGVRNMFH
SCTGQALKLLLQKLGPVTETETQLPWILVGETLKTMAKSTVVYIYKEHFSVFFDGLQESL
LELHSKGTEANSCENSEQMRRLLETYLIVVRHGSGSKVSRPADICRVLSEALQTANLSTS
CRKTLLDVVSALLLAENVSLPETLIKETIEKVFESKFERRLILDFSEVMFAMKQFEQLFL
PSFLLYIENCFLMDNSVVCDEALAILAKLILHKAAPPTAGSMAIEKYPLVFSQQTVGSYL
KQRKADSKRRKEPFPVLNHLLSIIQLPPNKDATYLSQSWAALVVLPHHRPLEKEKTISLV
SCFIESLFLAVDSGSFGKGHLFVLCQAVNTLLSLEESSELLHLVPVERVKHLVLTFPTEP
SVLLLADLYYQRLALCGCKGPLSEEALMELFPKLQANISTGVSKIRLLTIRILNHFDIQL
PVSVEDDGLSERQSAFAILRQAELVPATVSDYREKLLHLRKLRHDVVQGAVPQGQLQEVP
LRYLLGMLYVNFSALWDPVIELISSHAYGMENKQFWNVCYEHLEKAASHAEKELQKDVKN
EESMGDESWEQTQEGDIGNLYQQQLALKTDCRERLDHTNFRFLLWRALAKFPDRVEPRSR
ELSPLFLRFINNEYYPADLQVAPTQDLRRKGRGAVAEEVEEEPAAGEDEELEEEAMPTDE
APQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQAVQKVTLDCI
MTYRHPHILPYRENLQRLLEDRSFKEEIVHFNISEDNTVVKAAHRADLFPILMRILYGRM
KNKTGSKTQGKSASGTRMAIVLRFLAGTQPEEIQLFLDLLSEPVKHFKNGDCCSAVIQAV
EDLDVSKVLPVGRQHGVLNSLEVVLKNISHLISAYLPKILQILLCMTATVSHILDQREKI
QLRFINPLKNLRRLGIKMVTDIFLDWESYQFRTEEIDAVFHGTVWPQICRLGSESQYSPT
PLLKLISIWSRNSRYFPLLAKQKPGHPECDILTNVFAVLSAKNLSDGTASIIVDIVDDLL
NLPDFEPTETVPSLPVTGCVYTDVADNTEPVTVGGRLILPHVPAILQYLSRTTISAEKVK
KKKNRAQVSKELGILSKISKFMKDREQCSLLITLLLPFLLRGNVSQDTELDILVTVQNLL
QHCLDPTHFLRPLAKLFSVIKNKLSRQLLCTVFQSLSDFDSGLKYITDIVKLNAFDKRHL
DDINFDVRFSAFQTITSNIKTMQKVDADYLISVMHNCFYNMEIGDMSLSDNASICLTSII
KRLAALNVTEKEYKEIIHRTLLEKLRKGLKSQTESVQHDYTLILSCLIQTFPNQLEFKDL
VQLTHYHDPEMDFFENMKHIQIHRRARALKKLAKQLLEGQVMLSSKSLQNYIMPYAMAPI
LDEKMLKHENVTNAATEVIGAICRYLSWPAYVYYLKHFIHVLQSGQINQKLAVSLLVIVL
EAFHFDYKTLEEQMENVKNEEKTVEMAELLEHEAMEVEDMDEEGKEQASERLSDSKEPLE
APEAAASEGTAAKEQECISKSVSFLPRNKEELERTIQTIQGAITGDILPRLHKCLASATK
REEEHKLVKSKAVNDEEVVRVPLAFAMVKLMRSLPREVMEANLPSILLKVCVLLKNRAQE
IRDIARSTLSKIIEDLGVHFLQYVLKELQTTLVRGYQVHVLTFTVYTLLQGLSSKLQVGD
LDSCLHIMTEIFNHELFGALAEEKEVKQILSKVMEARRSKSYDSYEILGKFVGKQQVTKL
ILPLKEILQNTTSLKLARKVHETLRRIIAGLIVNPDMTADALLLLSYGLVSENLPLLTEK
EKKPAAPVPDARLPPQSCLLLPATPVRGGPKAVVSKKTNMHIFIESGLRLLHLSLKTSKI
KSSSEHVLEMLDPFVSVLINCLGAQDVKVVTGALQCLIWVLRFPLPSIATKAEQLTKHLF
LLLKNYARVGAAQGQNFHLVVNCFKCVTIVVKKVKSHQITEKQLQVLLAYAEEDIYDTSK
QATAFGLLKAILSRKLLVPEIDDIMRKVSKLAISAQNEPARVQCRQVFLKYILDYPLGEK
LRPNLEFVLAQLNYEHETGRESTLEMIAYLFETFPQGLLHDHCGMFFIPLCLMTVNDDSA
MCKRMASMAIKSLLSKVNQDKKDWLFGLVTSWFEAKKRLNRQLAALTCGLFVESEGVDFE
RRLGTLLPVIEKETDPENFKDIIEEEEEKAADRLLFGFLTLMSKLIKECNILHFTKPAET
LSKIWSHVHSHLRHPHSWVWLAAAQIFGLLFASCQPEELIQKWKGKKAKKKTSDPIAVRF
LTSDLGQKMKSISLASCHQLHSKFLDESLGEQVVKNLLFIAKVLYLLELESGNKQGELKI
SEEQDTLGDALAREAAEEKAGAGGKTESDREEKEEPSKPATLMWLIQKLSRMAKLEAAYS
PRNPLKRTCIFKFLGAVAVELGVGRVKPYLPVIIAPLFRELNSTYAEQDPVLKNLSQEII
ELLKKLVGLESFSSAFASVQKQASEKRALRKKRKALEFVTNPDIAAKKKLKKHKNKSEAK
KRKIEFLRPGYKAKRQKSQSLRDLAMVE
NT seq
8367 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaagccactttcccacaagaccgagaacacctaccggtttcttacatttgcg
gaaagactggggaatgtgaacattgatattattcaccgtattgatagaactgcaagctat
gatgaggacgtcgagacttacttcttcgaggctctactgaagtggagagagctgaacctt
acggagcatttcgggaaattttacaaagaagtcattgacaaatgtcagtcttttaaccag
ttggtctaccatcaaaatgaaattgttcacagcttgaagactcacctacaagttaggaac
agttttgcctaccaacctcttttggatttagtagtacagttggcacgagatctgcagact
gatttctacccccactttgaagacttcttcctgacaatcacgtccatcctggagactcag
gacacagaactcttagaatgggctttcacctcgctctcgtatctttacaagtacctctgg
agactgatggtgaaggacatgtccaagatttacagcttgtatagcaccctcttggctcat
aaaaaactacatataagaaattttgctgccgaaagttttactttcttgatgagaaaggtc
tctgataaaaatgcacttttcaatttaatgtttcttgatcttaatgaacatccagagaaa
gtggaaggagttggacagctgctctttgaaatgtgcaagggagtcaggaatatgtttcat
tcctgcacaggccaggcactgaagctccttttgcaaaagctaggaccagtcactgagaca
gagactcaacttccatggattttagttggggaaaccttaaaaaccatggccaaatccact
gtagtgtatatctataaggaacatttcagtgtgttttttgacggtttgcaagagtcactc
ctggagctacacagcaaagggacagaagcaaacagctgtgagaactctgaacagatgagg
cgcttgctggaaacttacctgatagtcgtgagacatggaagtgggtccaaggtctcacgg
cctgctgacatatgtagggtattgtctgaagcattacagacagccaatctttccacatct
tgccggaagactctcttggatgtagtttctgctttgctcctagctgagaatgtttccttg
ccagagaccctcatcaaagaaaccatagaaaaagtattcgaaagcaaatttgagagacgt
ttgattttggatttttctgaagtcatgtttgctatgaagcagtttgaacagctgttccta
ccgagctttctcttgtacattgagaattgcttcttgatggacaactctgtggtctgtgat
gaagcactggccatcttagccaagctcattctacacaaagccgctcctcccactgccggc
tccatggccattgaaaaataccctctggttttctcacagcagacagtgggatcctactta
aagcagaggaaggctgactccaagagaagaaaggaaccgtttccagtcttaaaccatctc
ttatccataattcagttacccccaaataaagatgccacatacctttcacagtcttgggca
gcccttgtggtgttacctcatcatagacctcttgagaaagagaagacaatatcgcttgtg
tcctgcttcatagagtcactcttcctggctgttgacagtgggagctttggaaaaggacat
ttatttgtcctttgtcaagctgtaaatactctgctaagtttggaggagtcttcggaactt
cttcatctggttcctgtggagcgagtgaagcacttggtgttaacatttccaacggaacca
tctgtgttgctgttggccgatctctattatcagaggctagcattatgtggatgtaaaggg
ccactctctgaggaggctttaatggaattatttcccaagttacaagccaacatctcaact
ggtgtctccaagattcggcttttgacaataaggatcctaaatcattttgacatccagctt
ccagtttcagtggaggatgatgggctctcggagcggcagtcagccttcgctatattacgc
caggctgaactcgtgccagcaactgtgagcgattacagagagaagcttctgcacttgaga
aagctgagacatgatgtggtgcagggtgcagtccctcagggacagctgcaggaggtgcca
ctccgttatctgttaggcatgctgtatgtcaacttcagtgccctctgggaccctgttatc
gaactcataagttctcatgcctatggaatggaaaacaagcaattctggaatgtctgctat
gaacatctagaaaaggcagcttcccatgctgaaaaagaactgcagaaggatgtgaaaaac
gaagagtccatgggagatgaaagttgggagcaaacccaggaaggagacattggcaatctt
taccagcagcagttagcattgaaaaccgactgtcgggaacgactggaccacaccaacttc
cgattcttgctttggcgagctttggccaaattcccagatcgggtagagccacggtccagg
gaactctccccacttttcctgagattcatcaacaatgagtattatccagcagatctacaa
gttgctcctactcaggatctacgcagaaaaggccgaggagcagtggctgaggaagtggaa
gaagagcctgctgctggagaggatgaagaactggaggaagaggccatgcccacagatgaa
gcgccccagaagaaaaagacaagaagggctgcagcaaagcagctaattgctcatttgcaa
gtcttctctaagttttcaaacccacgggccttatatctagaatccaaattgtatgagttg
tatcttcagttattgctgcaccaagatcaagctgtgcaaaaagtaaccttggactgcata
atgacctacagacatcctcatatcctcccgtacagggaaaacttacaaaggctgctagaa
gacaggagctttaaggaagagattgtgcatttcaacatctcagaagataacactgtagtg
aaagcggcgcaccgggcagatttgtttccgattctgatgagaattttatatgggcggatg
aagaataagacggggagtaaaacccagggcaaatctgcttcaggaacccgcatggccatt
gttttgcggttcctcgcagggacccagcctgaagagattcagttattcttagacctgctg
tctgaacctgtgaaacacttcaagaatggggattgctgttctgctgtcatccaggcagtt
gaggacttggatgtgtctaaagttcttcctgtggggcggcagcatggtgtcttgaacagc
ctggaagtcgtgttgaagaacatcagtcatctcatcagtgcataccttcccaagatcctg
cagatcctgctgtgtatgacagcaaccgtctcccacatccttgaccagcgagagaagata
cagctgaggtttattaacccactgaaaaatttaagacgtctgggaatcaagatggtcacc
gatatctttttggattgggaatcctatcagttcagaacagaagagattgatgctgtattt
catggtacagtttggccccagatctgcaggcttggatctgagagtcagtattcgcctact
cctctgttgaaactaattagcatctggagcagaaattcaagatatttccctcttctggct
aaacagaaacctgggcacccagaatgtgacatcctgaccaatgtctttgcagttctctca
gcaaagaacctgtcagatggcacagctagcattatagtggatatagtcgatgatctcctc
aaccttccagatttcgagcccacagaaacagtgccgagcttgccggtaactggctgtgtg
tacaccgacgtagcggacaacacggagcctgtcactgtaggagggagactgattctgcca
catgtgcctgcaatccttcagtatctcagcagaaccacgatcagtgcagaaaaggtgaag
aagaaaaagaacagggctcaagtcagtaaggagcttggcatcctttccaagataagcaag
tttatgaaagacagagagcagtgttctctccttattaccctcctccttccgttcctcctc
cgaggcaatgtttctcaggatacagagcttgacatcctggtgacagtgcagaacttgtta
cagcactgtctggatcccacacacttcctcagacctctcgccaaactcttttcagttatt
aaaaacaagttgtcaagacagctgctctgtaccgttttccagagcctgtctgattttgat
agtggactaaaatatattacagatattgtaaagcttaatgcctttgataaaagacatctc
gatgacatcaactttgacgttcgattctcagccttccagaccatcacctccaacataaag
acaatgcagaaggtggatgcggactacctcatctccgtgatgcacaactgcttctataac
atggagataggagacatgtctttaagtgacaatgccagcatatgcttgacaagcatcatc
aaaaggctagctgctttgaatgtcacagagaaagagtataaggagatcattcaccgcaca
ctcctggagaaactgaggaagggactgaagagccagacagagagtgttcagcatgactat
accctgatcctttcctgtttgattcaaacttttccaaatcaactggaatttaaggacttg
gtgcagctcactcattaccatgacccggaaatggacttctttgagaacatgaagcacatt
cagatccacaggagagcaagagccttgaagaaattggctaagcagctcctggaaggccag
gttatgctgtcttctaaatctcttcagaattacatcatgccttatgccatggctccaatt
cttgatgagaaaatgctcaagcatgaaaacgtaaccaatgccgccacggaggtcattggg
gccatctgcagatacctgtcctggccagcatatgtctattacttgaagcatttcatccat
gtcttacaatcaggccaaatcaaccagaaactggctgtcagtttgctggtgatcgtgttg
gaagcattccattttgactacaaaactcttgaagaacagatggaaaatgttaagaatgaa
gaaaaaacagttgagatggctgagttactggagcatgaagccatggaagtggaggacatg
gacgaggaggggaaggaacaagcctctgagagattgtcagacagcaaggagccactggaa
gcccctgaggccgctgcttctgaggggacagcagctaaggagcaagagtgcatttccaag
tctgtctcttttcttcctcggaataaggaggagttagaaagaacaattcaaaccatccag
ggagccataactggcgacatcctccccaggctgcataagtgcctcgcgtctgcgaccaaa
agagaagaagaacacaagctggtcaagtcaaaggccgtgaatgacgaggaggtggtccga
gtgcccctggctttcgccatggttaagctgatgcggtcccttccacgggaagttatggag
gcaaatctgcccagtattttgctgaaagtgtgtgtcctcctcaagaacagagcacaggaa
atcagagacattgcacgcagcactctctccaaaataattgaagatctgggtgtgcatttt
ctgcagtatgtcctgaaagaattacagacgacccttgtccgagggtatcaggtccatgtg
ctcactttcactgtgtacacattgctgcaaggcctctccagcaagctgcaagtcggagat
ttagattcttgtcttcacataatgactgagatttttaaccatgagttgtttggtgccctt
gctgaagaaaaggaagtaaagcagattctgtctaaagtcatggaggctcggaggagcaag
agttacgattcttatgaaatcctgggcaagtttgtgggaaaacagcaagttacgaaactt
attcttccattaaaagagatcctacagaacaccacgagtttaaaacttgcccggaaagtt
cacgaaaccttacgccgaattatagcaggattaattgtgaatccagacatgacagcagat
gctcttctgctgctcagttacggtttggtcagtgaaaatctgccactgctaacagaaaag
gaaaaaaagccggcagcccctgtgcctgatgctcgactgccaccccagagctgccttctg
ctccctgcaactccagttcgaggtgggccaaaagctgtcgtgagcaagaagaccaacatg
cacatatttattgagtctgggcttcggctgctgcacctgagtctaaagacatccaagatc
aagtcttctagtgagcatgtgctggaaatgttggacccttttgtgtctgtcctcataaac
tgcctgggtgcccaggatgtgaaggtggtcaccggtgctttgcagtgcctgatctgggtc
ttgcggttccctctgccttccatagcaaccaaagcagagcagctgacgaaacaccttttc
cttttgctgaaaaactatgcaagagtcggggctgcccagggccagaacttccacctggtc
gtgaattgtttcaagtgtgtgaccatcgttgtaaagaaagtcaagtctcatcagataact
gagaaacagctccaagttcttctggcttatgctgaggaagacatttatgatacttcaaaa
caagccactgcgtttggtcttctgaaggctattttatcaagaaaattattggtcccagaa
attgatgatatcatgcggaaagtatccaagttggcaatttctgcacaaaatgaacctgcc
agggtccagtgcagacaggttttcctgaaatatattcttgactatccccttggtgagaaa
ttgagaccgaacttggaattcgtgcttgctcagctgaattatgaacatgagacgggaaga
gaatccactttggaaatgatcgcctatctgtttgagaccttccctcagggactcctccat
gaccactgcgggatgttcttcatccctctttgcctgatgacggtcaacgatgactctgcc
atgtgcaaaagaatggcatccatggccatcaagtccttactcagcaaggtcaaccaagac
aagaaagactggctgtttggtcttgttacctcctggtttgaagcaaaaaagcgattaaac
aggcaactggctgccctgacctgtggtttatttgtggaaagtgaaggagttgactttgag
agaaggcttggaactcttcttcctgtgattgaaaaggaaactgatcctgaaaattttaaa
gatatcatagaggaggaggaagagaaggctgcagatcgcctactattcggttttctcaca
ctgatgagcaaactcatcaaggaatgtaacattcttcactttaccaagcccgccgagact
ttgagtaaaatctggagtcatgtgcactctcacctcagacatccgcacagctgggtgtgg
ctcgcagcagcccagatttttggattgctctttgcctcttgccaaccagaagagctcatt
caaaaatggaaaggcaagaaggccaaaaagaagacctcggaccctatagcagtcaggttc
ctaacaagtgaccttggccagaagatgaagagtatctctctggcgtcatgccatcagctg
cattccaaattcttagatgagtctctgggagagcaggttgttaagaacttactgttcata
gcaaaagtcttatatttactggaacttgaatctgggaacaagcaaggagagttaaaaatc
tcagaagaacaggacactttaggagatgctctggccagagaggcagcagaagagaaggct
ggtgcgggtggaaagacagagtctgacagagaagagaaggaagaacccagcaagccggcc
acattgatgtggctgatccagaaactgtcccgaatggctaagctggaagcagcgtattcg
cccagaaatcccttaaagagaacctgcatctttaagttccttggtgccgtggctgtggag
ctcggagtaggccgggtaaagccctatctcccagtgatcatcgctcccctgtttcgagaa
ctcaacagcacctatgcagagcaagatcctgtgctgaagaatttatcccaggaaatcata
gaattactcaaaaagctggttggacttgagagcttctcatcagcctttgcctctgtccag
aaacaggctagtgaaaagagggcgctccggaaaaagaggaaggctctggagtttgtaacc
aatcccgatattgctgccaagaagaagttgaagaaacataaaaataaaagtgaagcaaag
aagagaaagatagagttcctgcgccccggctataaggccaagagacaaaagtcccagagc
ctccgagacttagcaatggtggagtga
DBGET
integrated database retrieval system
