Mastomys coucha (southern multimammate mouse): 116076743
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Entry
116076743 CDS
T07224
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116076743 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116076743 (Ddx42)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116076743 (Ddx42)
Spliceosome [BR:
mcoc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116076743 (Ddx42)
Complex B
116076743 (Ddx42)
Complex C
U2 SnRNP specific factors
116076743 (Ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
116076743
NCBI-ProteinID:
XP_031206484
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWSWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGTSTAGASGWTSAGSLNSVPTNSAQQGHNSPDNPITSSTKNIPGFNNSGNISSAPVTY
PSIGAQGVNNTASGSNSREGIGGGNGKRERYTENRGGGRHSHGDGGNRHGDGGRHGDGYR
YPESGSRHTDGHRHGETRHGGSAGRHGESRGANDGRNGESRKEGFNRENKMDPKVDSSRM
DKVDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggcggccctggaaccaagcggggatttggatttggaggttttgcc
atcagtgctgggaagaaggaggaagccaaactgccacagcagtcccacagtgcctttggg
gcagccagttcttcttctggatttggaaagtctgctccaccacagcttccttctttctac
aaaattggatctaagcgggccaactttgacgaagaaaatgcgtattttgaagatgaagaa
gaagactccagcaatgtagatttaccttacattcctgctgaaaactcacctacccgccag
cagttccattccaagccagcagactctgacagtgacgatgaccccttagaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagagacttgaagaaaaggacaaggaa
agaaaaaacgtcaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcggagaacccaactgctggagtggttcaggaggaagaggaggacaat
ctggagtatgacagtgatggaaatccaattgcaccctccaaaaaaattatcgatcccctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcaccccacagcagttaatagacctgcggcataaactcaac
cttcgggtctctggtgctgcacctcctcgaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattaggaaatctgagtatacacagccaactccaatacag
tgtcagggtgtgcctgtagcactgagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgcagcctttatttggcccatgttaattcatataatggatcagaaggaa
ttggaaccaggtgatggaccaattgcggtgattgtgtgtcctactagggagctttgtcaa
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtggcagta
tatggaggaggaagtatgtgggagcaggccaaggcccttcaggaaggggcggagattgtt
gtatgtaccccaggtcgactgattgatcatgtgaagaaaaaagctactaatcttcagaga
gtctcttaccttgtgtttgatgaggccgatcgaatgttcgacatgggatttgagtatcaa
gttcggtccatagcaagtcatgttcgtcctgacagacaaactcttttattcagtgcaact
tttcgaaaaaagattgaaaagttggccagagacatcttgattgaccctattcgagtggtg
cagggagacattggagaggcaaatgaagacgtgacgcagattgtggagatcctccactct
ggacctagtaaatggagctggcttactcggcggctggtggagttcacttcttcagggagt
gtcctcttgtttgtgactaagaaagccaatgctgaagagctagccaataaccttaagcaa
gagggtcacaatctgggtctgctccatggggacatggatcagagtgaaagaaacaaggtc
atttcagattttaagaaaaaggacatccccgtcctggtggccactgacgttgcagcccgt
ggtctggatattccttcaattaagacagtcattaactatgatgtagcacgagacattgat
acccatactcatagaattggccgaacaggaagagctggtgagaagggtgtagcctatacc
ttactgaccccaaaagacagcaattttgctggtgaccttgtacggaacctggaaggagcc
aaccaacatgtttctaaggaactcttagatctcgcaatgcagaatgcctggtttcggaaa
tctcgcttcaaaggagggaaaggcaaaaagctgaacattggtggaggaggcttgggctat
agagagcggcctgggctgggctccgagaactcggaccgaggaaataataacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagataggctgacagcaatg
aaagcagcttttcagtcccagtacaagagtcactttgttgcagccagtttaagtaatcag
aaggccggaacctctactgctggggcaagtggatggactagtgcaggaagcttaaattct
gttccaactaattcagcacagcagggccataacagtcctgacaaccccatcaccagttct
actaagaacatcccaggcttcaacaactctgggaatatcagtagtgccccagtgacctac
ccttctattggagcccaaggagtcaacaacacagcttcggggagtaacagccgtgaaggg
attgggggtggcaatgggaagagagagagatatactgagaaccgaggtggtggccgtcat
agccatggagatggtggcaatcggcatggagatggtggccgccatggagatggataccgt
tatccagaaagtggtagccgtcatactgatgggcaccgacatggagagaccaggcacgga
ggaagtgccggcagacatggagagagccggggtgcaaatgatggcaggaatggagaaagc
aggaaagaaggttttaatcgtgaaaacaagatggaccccaaagtggatagcagcaggatg
gacaaagtggacagcaagacagacaagacacccgatggctttgctgttccagagccaccc
aaacgcaagaaaagccgatgggatagttag
DBGET
integrated database retrieval system
