Mastomys coucha (southern multimammate mouse): 116077032
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Entry
116077032 CDS
T07224
Symbol
Brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03440
Homologous recombination
mcoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116077032 (Brip1)
03460 Fanconi anemia pathway
116077032 (Brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116077032 (Brip1)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116077032 (Brip1)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116077032 (Brip1)
FA (Fanconi anemia) pathway
Downstream FA components
116077032 (Brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
AAA_17
ARCH_RTEL1
HBB
DUF1866
Motif
Other DBs
NCBI-GeneID:
116077032
NCBI-ProteinID:
XP_031207117
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MSSVWSEYTIGGVKIHFPCKAYPAQLAMMNSIVRGLNSRQHCLLESPTGSGKSLALLCSA
LAWQQSLSEKPVDEGLNKKPEAPSSCSCACHSKNFTYSDTNLDTSPHFSSPSKPSSRRNG
VSSPCQDSPEKNTLAAKLSAKKQASIHRGEDDDFQVEKKRIRPLETTQQIRKRHCLEKDV
HHIDARLASERRGNPESPVRKTSSSFQNPDGLCSRCCCSAKQGSTEEPVNTVKKDHGGQS
KRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNFNRKEKCMEL
LDGKHGKSCYFYHGVHKISNQQTLQCLQGMSKAWDIEELVSLGRKLKACPYYTARELIDD
AEIVFCPYNYLLDAQIRETMDIKLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDE
LDSLINSNIRKKSHEPLRDVCYNLINWLETNSKHLVERGYESSCKIWSGSEMLLNLYRMG
ITTATFPALQRHLSAVLQKEEKAISIHGKEEAIQIPIISASTQIMLKGLFMVLDYLFREN
SRFADDYKVAIQQTYSWTNQIAIFDKTGVVAVPKNKKHSRQKIGVNVLNFWCLNPAVAFS
DINDKVRTIVLTSGTLSPLKSFSSELGVTFSIQLEANHVISNSQVWVGTVGSGPKGRNLC
ATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVK
TVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVIT
VGIPFPNVKDLQVELKRQYNDHHSKSRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGA
LILVDGRFNNNPNRYISGLSKWVRQQIQHHSSFASALESLTEFSRRHQKVTNRSRKDEKC
TKDNEPTLEVACLEDSAITGVSEASHQSPENATEEEAKVHVQELQDPQMAAKNPLVPSHG
VSRRKKSDPGLREESVQTVKTERKEISRSSSPTFGKQTEPVNWPIFNSLRRHFTSKVKNC
TPVLKSSKNRASGSPTFSKTALPLTGNCVSSDETADTSLAPCPQSEAIISPVKVDATPAK
NHSKQMFCSEKDLLLDTELSPGAEEAKCSSSNKAVEAEVDDDSACFTPELFDPIDTDEEN
GELVETDGSSNNSDCFSAEELFETATEFGQK
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagtgtggtctgaatacaccatcggtggggtgaagattcactttccctgtaaa
gcttatccggcgcagctggctatgatgaattctattgtcagaggactgaacagtagacaa
cattgtttgttggagagtcccacaggaagtggaaaaagtttagccttactttgttctgca
ttagcatggcaacaatctcttagtgagaagccagtggatgagggcctgaataaaaagcct
gaagcgccatcttcatgttcttgtgcatgccattcaaagaattttacctacagcgacaca
aacctggacacgtcacctcacttcagtagtccaagcaaaccctcttctcgaagaaatgga
gtctcatcaccctgtcaagactctcctgaaaaaaatactctggctgcaaagttatctgcc
aagaaacaggcatccatacacagaggtgaagacgatgattttcaggtagagaagaaaaga
atccgacccttagaaactacacagcagataagaaaacgtcattgtttggaaaaggatgtc
caccatatagatgcacgtctagcttcggaaaggagaggaaatcctgagtctcccgtaaga
aagacaagctcctctttccaaaatcccgatggcctttgttccaggtgctgttgttcagct
aaacaaggaagtaccgaagagcctgtaaacactgttaagaaagatcacgggggacaatcc
aagagacctaaaatttattttgggacacgaacacacaagcagattgctcagattactaga
gaactccgtaagacagcttactcaggggtcccaatgactattctttccagcagggatcat
acctgtgttcatcctgaagtagtgggaaacttcaacagaaaagaaaagtgcatggaattg
ctggatggaaaacatgggaaatcctgctatttctatcatggtgttcataaaattagtaat
cagcagacattgcagtgtcttcaggggatgtccaaagcctgggacatagaagaactggtc
agcctcgggaggaaactgaaagcttgtccctactatacagctcgggaactgatagatgac
gctgaaatcgttttttgtccctacaactaccttttagacgcacaaataagggaaactatg
gatataaagctaaaagaacaagttgtcattttagatgaagctcataacattgaagactgt
gctcgggaatcggcaagctacagtgtaacagaagttcagcttaggtttgctcgggatgag
ctagatagtttgatcaacagtaatataaggaagaaaagccacgagcccctacgagatgta
tgctataacctcatcaattggttagaaacaaattctaagcatcttgtagaaaggggttat
gaatcatcttgtaaaatatggagtggaagtgagatgctcttaaacttatacagaatgggc
atcaccactgctacttttccagctttgcagagacatctctcagccgttcttcaaaaagaa
gaaaaagccatatcaatccacggtaaagaggaggcaatacaaatacctattattagtgca
tcaactcaaatcatgctcaaaggactctttatggtgcttgactatctctttagagaaaat
agcagatttgcagatgattataaagttgctattcagcagacttactcctggacaaatcag
attgctatttttgataaaactggggtcgtggctgtaccaaaaaataagaaacattcacga
cagaaaattggagttaatgtgctaaacttctggtgcttaaatccagctgtggccttttca
gatattaatgacaaagtacggaccattgttctaacatcaggaacactgtcacccctgaaa
tccttttcatctgagcttggtgtcacatttagcatccaactggaggctaaccatgtcatc
agtaactcacaggtttgggttggtactgttggctcaggccctaagggtcggaatctctgc
gctacctttcagcatactgaaacatttgagttccaggatgaagtgggaatgcttctgtta
tctgtatgccagactgtgagccaaggaattttgtgctttttgccatcttacaagctatta
gagaaattaagagaacgttggattttcactggcttatggcatagtttggagtcagtgaag
acagtcattgcagaaccccaaggaggagaaaaaactgattttgatgaattgctgcaggtg
tactatgacgccatcaagttcaaaggagaaaaggatggagcccttctcatagcagtttgt
cgcggcaaggtgagcgagggtctggatttctcagatgataatgcccgtgctgtcataact
gtggggattcctttcccaaatgtgaaggatcttcaggtggagctaaaacgacaatacaat
gaccaccactccaaatcgagaggtcttctgcctggccgtcagtggtatgaaattcaagca
tacagagccttgaatcaggctctgggcagatgtattcgacacaaaaatgattggggagct
ctcattctagtggacggtcgcttcaataacaacccaaaccgctatatatcaggactttct
aaatgggtgaggcagcagattcagcaccactcaagctttgcaagtgccctggagtctctg
actgagttctccagaagacaccagaaagttactaatagatccagaaaagatgaaaaatgt
acaaaagacaatgagcctactctggaagtggcctgtttggaggacagcgctattacaggt
gtgtcagaagcaagtcatcaatcgccagaaaacgctacagaagaagaagcaaaagtgcat
gtccaggagctgcaggatccccagatggctgctaaaaaccccttagtaccaagtcacggg
gtttccagaaggaagaaaagtgatccgggactaagagaagagtctgttcagacagtgaaa
acagaaagaaaagagatttcccgatcttcaagcccaactttcggaaagcaaacagagcca
gtcaactggcctatctttaattctctaagacggcatttcacaagtaaagtaaaaaattgc
acaccagtactcaagtcatcaaagaaccgtgcctctggctctcccactttcagtaaaact
gctttgccactcacaggtaattgtgtgtcctcagacgaaacagcagacacatccttggca
ccttgccctcagtcggaagccataatctcaccagtgaaggttgacgctactcctgctaag
aaccattccaaacagatgttctgctctgagaaagacctactcctggatactgaattgtct
ccaggagctgaagaagccaagtgttccagctcaaacaaagctgttgaagcagaagtggac
gacgactccgcatgtttcacgcctgaactttttgatcctatcgataccgacgaagaaaac
ggtgaactagttgaaactgatgggtccagtaataattcagattgtttttcagccgaagag
ctgtttgaaactgcaactgagtttgggcagaagtga
DBGET
integrated database retrieval system
