Mastomys coucha (southern multimammate mouse): 116077260
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Entry
116077260 CDS
T07224
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116077260 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116077260 (Lig3)
Enzymes [BR:
mcoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116077260 (Lig3)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
116077260 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
116077260
NCBI-ProteinID:
XP_031207521
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MTLAFKILFPRNLCALGRKELCLFPEHNRRAAIRQFSQWSETNLLWGSCLLQRRKSVLSF
QRGHLRPRATHLIFWPGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKDQISQ
HIADLSSKAVATPKKKAAVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNPEQ
APPSPAPRTSLSTRKCDPKHKDCLLREFRKLCATVAENPSYNTKTQIIHNFLQKGSTGDG
FHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCVIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLHDVVERVLHNEQEVEKDPGRRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADF
AVVAGDEGSSTTGGSSGENEGTAGSAVAHKGPKGPSSKSSSAKKTEQKLNNPSSRGDNKL
TPKSSPVKPGEKLAVKSSPVKVGTKRKATDDTPCLTKVLLDVFTGVRLYLPPSTPDFKRL
KRYFVAFDGDLVQEFDTASATHVLGNREKNTDAQLVSSEWIWGCIRKRRLIAPC
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagatcctcttcccgagaaacctttgtgcccttggcagaaaagaa
ctgtgcctgttcccagaacataatcgcagggccgccataagacagttcagccagtggtcg
gaaacaaatctgctttgggggagctgcctcctccagagaagaaagtctgtcctttctttc
cagagaggtcatctaagaccacgtgccacccacctcattttctggccagggtcgcatgtg
ggactctgtactggcccttgtgagatggcggaacagcggttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaagggcgtatgccgcatt
ggcaaagtggtacccaaccctttctcagagtctgggggtgatatgaaagagtggtaccac
attaagtgcatgtttgagaaactagaacgggcacgggccaccacaaaaaaaattgaagac
ctcacagagctggaaggctgggaagagctggaagataatgaaaaggaccagataagccag
cacattgcagacctgtcttctaaggcagttgccacacctaagaagaaagctgctgtccag
gctaagctgacaaccactggccaggtgacatctccagtgaaaggtgcttcatttattacc
agtaccaatccccggaaattctctggcttttcagcagccaaacccaacaaccctgagcaa
gcccctccaagccctgctcctaggacgagtctgtccacaaggaaatgtgaccctaagcac
aaagattgtctgttacgagagttccggaagctatgcgccacggtggctgaaaatcctagc
tataacaccaagacccagatcatccacaacttcttgcagaaaggctccacaggagatggc
ttccacggtgatgtgtacctaacagtgaagctgctgctgcctggtgtcatcaagagtgtt
tacaacttaaatgataagcagattgtgaaactttttagccgaatttttaactgcaaccca
gatgatatggcccgggacctagaacagggtgacgtgtcagagacgatcagagtcttcttt
gagcagagcaagtcttttcccccagctgccaaaagcctcctcaccatccaggaagtggat
gcattcctcctgcacctctccaagctcaccaaagaggatgagcagcagcaggccctacaa
gacattgcctctaggtgtacagccaatgaccttaagtgcgttatccggctgatcaaacac
gatctgaagatgaacgcgggcgcaaaacacgtgttagatgcccttgaccccaatgcttat
gaagccttcaaagcatcgcgcaacctgcatgatgtggtggagcgggtccttcacaatgag
caggaagtggagaaggacccaggccggcgacgggctctgagtgtccaggcctcactgatg
actcctgtgcagcccatgctggccgaggcctgcaagtccatcgaatatgcaatgaaaaag
tgtcctaatggcatgttctctgagatcaagtacgatggtgagcgggtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctgaagcctgtcctccctcacaaggtg
gcccacttcaaggactatattcccaaagcttttcctgggggtcaaagcatgatcctggat
tccgaggtgctcctgattgacaacaacacaggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgctttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tactttaatgatgtcagcttgatggacaggcctctctgtgagcgacggaagtttcttcat
gacaatatggttgaaatccgtaaccggattatgttctcagaaatgaagcaagttacaaaa
gcttcagacctggctgacatgataaaccgggtgatccgagagggcttggaagggttggtg
ctaaaggatgtgaagggtacatatgagcctgggaagcggcactggctgaaagttaagaaa
gattatttgaacgagggggccatggccgatactgctgatctggtggttcttggggccttc
tatgggcaagggagcaaaggcggaatgatgtccatcttcctcatgggctgctatgaccct
gacagccagaagtggtgcactgtcacaaaatgtgctggaggtcatgatgatgccaccctt
gcccgcctgcagaaagagctagatatggtgaagatcagcaaggatcctagcaagataccc
agctggctgaagatcaacaagatctattatcccgacttcattgtcccagacccaaagaaa
gctgctgtgtgggagatcacaggggcagaattctccagatctgaggcgcacactgctgat
gggatctccatccgatttcctcgatgcacccgaatccgggacgataaggactggaaatct
gccactaacctcccccaactcaaggaactgtaccagctgtccaaagacaaggcagacttt
gctgtggtagctggagatgaggggagctccactactggaggcagcagtggtgaaaatgaa
ggcactgctgggtctgctgtggcccacaagggccccaagggcccctccagtaagtcctct
agtgccaagaagaccgaacagaagctcaataaccccagtagcagaggtgacaacaaactg
actccaaagtcttcccctgtgaaaccaggagagaagctggctgtgaagtcttctccagtc
aaagtaggaacgaagaggaaagctactgatgataccccatgcctgacaaaggtgctgttg
gatgtcttcactggggtacggctctacttgccaccttctacaccagacttcaaaaggctg
aaacgctactttgtggcatttgacggagacctggtacaggaatttgacacggcctcagcc
acacatgtgctaggtaacagggaaaagaacactgatgcccagttggtctcctcagagtgg
atttggggatgtatccggaaacggaggctgatagctccctgctag
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