KEGG   Mastomys coucha (southern multimammate mouse): 116077478
Entry
116077478         CDS       T07224                                 
Symbol
Rad50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03440  Homologous recombination
mcoc03450  Non-homologous end-joining
mcoc04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    116077478 (Rad50)
   03450 Non-homologous end-joining
    116077478 (Rad50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    116077478 (Rad50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcoc03032]
    116077478 (Rad50)
   03400 DNA repair and recombination proteins [BR:mcoc03400]
    116077478 (Rad50)
DNA replication proteins [BR:mcoc03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    116077478 (Rad50)
DNA repair and recombination proteins [BR:mcoc03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     116077478 (Rad50)
    BRCA1-C complex
     116077478 (Rad50)
   NHEJ (non-homologous end-joining)
    MRX complex
     116077478 (Rad50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 AAA_15 SbcC_Walker_B SMC_N ABC_tran AAA_29 DUF2703 SBP_bac_3
Other DBs
NCBI-GeneID: 116077478
NCBI-ProteinID: XP_031207902
LinkDB
Position
Unknown
AA seq 1312 aa
MSRIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGEVVAVQRSMLCSQKSKKTEFKTLEGVITR
KKHGEPVSLSSKCAEIDREMISCLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIGDQITRKEAQLASSQAI
VKSYENELEPLKNRLKEIENNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLSKEARLLNQEKAELLVEQGRLQLQADRH
QEHIRARDSLIQSLATHLELDGFERGPFSERQIKNFHELVKERQEREAKTASQLLSDLTD
KEAVKQRQIDEMRDKKSGLGRMIELKTEILTKKQSELRHVRTELQQLEGSSDRILELDQE
LTKAERELSKAEKNSSIETLKAEVISLQNEKADLDRSLRKLDQEMEQLNHHTTTRTQMEM
LTKDKTDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELKKKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKERRRDEMLGLVPMRQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEEQETLLGTIMP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQRRQQMEEQTVELSTEVQS
LNRDIKDAKEQISPLETALEKLQQEKEELIHRKHTSNKMAQDKINDIKEKVKNIHGYMKD
IENYIQDGKDDYKKQKETELNQVVVQLNECDKHKEKINKEMGTMRQDIDTQKIQERWLQD
NLTLRKRREELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEEKIDTIKRNHSLALGRQKG
YEEEILHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRVKKNIDQCSEIVKCSINSLGSYVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtccaggatcgaaaagatgagcattctgggcgtgcgaagttttgggatagaggataaa
gataagcagattatctctttcttcagccccctcacaattttggttggccccaatggggcg
gggaagacgaccatcattgaatgtctaaagtatatttgtactggagatttccctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacggatgtgcgagct
cagattcgcctgcagttccgagatgtcaatggagaggtagtggccgtgcagaggtccatg
ctttgcagtcagaaaagtaaaaagacagaatttaaaaccctggaaggagtcattactaga
aaaaagcatggtgaaccagtcagtctcagctccaaatgtgcagaaatcgacagagaaatg
ataagttgtctgggggtctccaagtctgtgctgaacaatgttattttctgtcaccaagaa
gactccaactggcctttaagtgaagggaaggctttgaagcagaaattcgatgagattttt
tcagcaacaaggtacattaaagccttagatacactacgacaggtacgtcagacacaaggt
cagaaagtaaaagagtgtcaaacagaattgaaatatctgaagcaaaataaggagaaagct
tgtgagattggagatcagatcactagaaaggaagcccagttagcgtcgtcacaggcaatt
gtcaagtcctatgagaatgaactcgagccattgaagaatcgactgaaagagattgaaaac
aacctctctaaaataatgagacttgacaatgaaattaaagccttggatagccgaaagaaa
caaatggagaaagataacagtgaattagaacagaaaatggaaaaggtgtttcaagggact
gacgagcaactgaatgacttgtatcacaatcaccagaggacagtaagggagaaggagagg
cgcttggtagactgtcagcgcgagctggagaagctgagtaaagaagcacggctcctcaac
caagaaaaagcagagctgcttgtggagcagggtcgtttacaactacaagcagatcgccat
caagaacatatccgagccagagattcattaattcagtctttggcaacacatcttgaattg
gatggttttgagcgtggaccattcagtgaaagacagattaaaaattttcatgaacttgtg
aaagagagacaagaaagagaagctaaaactgccagccagcttttgagcgacctgacagac
aaagaagctgtgaagcagaggcagattgacgagatgagggacaagaagagtgggctgggg
aggatgattgagctgaagacagagatcctcacgaagaagcagagcgaactgaggcacgtg
aggacggagctgcagcagctggagggctcctccgacaggattctggagctggaccaggag
ctcacgaaagctgaacgtgaactaagcaaggctgagaaaaatagcagcatagaaaccctg
aaagcagaggtaataagcctccaaaatgagaaagccgacctggacaggagcttgcggaag
ctggaccaggagatggagcagctaaaccaccatacaacaacccgcacccagatggagatg
ctcaccaaagacaaaactgacaaagatgaacagatcagaaaaataaagtccaggcacagt
gatgaactaacttcactgttgggctattttcctaacaaaaaacaacttgaagactggctt
cattctaaatccaaagaaattaatcagaccagggacagacttgccaaactgaacaaagaa
ctagcttcagctgaacaaaataagaatcatataaataatgagctaaagaaaaaggaagaa
cagttgtccagttatgaagataagctatttgatgtttgcggtagccaagattttgaaagt
gatttagacagacttaaagaagaaattgaaaaatcctcaaaacagagagccatgctggct
ggagccacagcagtttattcccagttcattacacagctgacagatgaaaaccagtcctgt
tgcccagtctgtcagagagtatttcagacagaggctgagttacaggaagttatcagtgac
ttgcagtccaagctgaggcttgctccagataaactcaagtcaacagaatcagagctgaag
aaaaaagaacggcgccgtgatgaaatgcttgggcttgtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacagactacagagtgtcaatagagac
atacagcgcctgaagaatgacatagaagagcaggaaacactcttgggtacaataatgcct
gaagaagaaagtgctaaagtgtgcctgacagatgttacaattatggagaggttccagatg
gagctaaaagatgttgaaaggaaaattgcacagcaggcagctaaactgcagggagtagac
ttggatcgaactgtccagcaggttaaccaggaaaaacaggaaaagcaacacaagctggat
acagtttccagtaagattgaattgaaccgtaagctcatacaggaccagcaggaacaaatc
caacacctgaaaagtaaaacaaatgagctgaaatcagagaaactgcagatcgccaccaat
ttgcaacggcgtcagcaaatggaggagcagactgtggaattatccactgaagttcagtct
ttaaacagagatataaaggatgctaaagaacaaataagccctttggagacagccctggaa
aagttgcagcaggaaaaagaagaattaatccacagaaaacatacaagtaacaaaatggct
caggataaaatcaatgatatcaaagagaaagttaaaaatattcatggttacatgaaagac
atagagaattatattcaagatggaaaagatgactataagaagcaaaaagaaactgaactt
aatcaagttgttgttcaactaaatgaatgtgacaaacacaaagaaaagataaataaagaa
atgggaaccatgaggcaagatattgatacccagaagatacaggaaaggtggctacaggat
aaccttaccctaagaaaaaggagagaggaattaaaagaagtggaagaagaacgaaaacaa
catttgaaggagatgggacaaatgcaagttttacaaatgaaaaatgagcatcagaagttg
gaagagaagatagacactataaagagaaatcacagtttggcattggggcgacagaaaggc
tatgaagaagaaattcttcactttaagaaggagctccgagaacctcagtttcgggatgct
gaggaaaagtatagagaaatgatgattgtcatgaggaccacagagctggtgaataaggac
ctggacatctactacaagactcttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgatctttggcggagtacctatcgtgggcaagatatt
gaatacatagaaattcgatccgatgctgatgaaaatgtatcggcttctgataaaaggcgg
aattacaactaccgagtggttatgctgaagggggacacagccttggacatgcgtggacgg
tgcagtgctggacagaaggtgctagcctccctcatcatccgcctggcactggctgagacc
ttctgtctgaactgtggcatccttgccttggatgagcctacaacaaatctcgaccgagaa
aacattgaatctcttgcacatgctttggttgagatcataaaaagtcgctcacagcagcgc
aacttccagcttctggtaatcactcacgatgaggatttcgtggagcttttagggcggtct
gagtatgtggagaaattctacagggtgaagaagaacatcgaccagtgctcagagattgtc
aagtgcagcattaactccctgggctcttatgttcattaa

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