Mastomys coucha (southern multimammate mouse): 116077579
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Entry
116077579 CDS
T07224
Symbol
Ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
mcoc05202
Transcriptional misregulation in cancer
mcoc05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116077579 (Ddx5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
116077579 (Ddx5)
05205 Proteoglycans in cancer
116077579 (Ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116077579 (Ddx5)
03009 Ribosome biogenesis [BR:
mcoc03009
]
116077579 (Ddx5)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116077579 (Ddx5)
Spliceosome [BR:
mcoc03041
]
Complex A
U1 snRNP components
U1 related factors
116077579 (Ddx5)
Complex B
116077579 (Ddx5)
Ribosome biogenesis [BR:
mcoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
116077579 (Ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
BNIP2
Motif
Other DBs
NCBI-GeneID:
116077579
NCBI-ProteinID:
XP_031208080
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MSSYSSDRDRGRDRGFGAPRFGGSRTGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVANMHNGMNQQAYAYPATAA
AAPMIGYPMPTGYSQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttattctagtgaccgagaccgcggtcgggatcgagggtttggtgcacctcga
tttggagggagtagaacaggacccctctctggaaagaagtttggaaatcctggggagaaa
ctagttaaaaagaagtggaatcttgatgagctgcccaaatttgagaagaatttttatcag
gaacaccctgatttggcaaggcgcactgcacaagaggtagatacgtacagaagaagcaag
gaaattacagttagaggtcacaactgtccaaaacctgttctgaatttttatgaagcaaac
tttcctgcgaatgtaatggatgtgattgcaaggcagaacttcactgagcccactgctatt
caagctcagggctggccagttgctctcagtggattggatatggttggagtagctcagact
ggatctgggaaaacattatcttatttgctgcctgccattgtacacataaaccaccagcca
ttcctagagagaggtgatggacctatttgcttggtgctggcaccaactagagaactggca
cagcaggtgcagcaggttgctgctgaatattgcagagcttgtcgcttgaagtctacttgc
atctatggtggtgctcccaaaggaccacagattcgtgatttggaaagaggtgtggaaatc
tgtattgcaacacctggaagactgattgactttttagagtgtgggaaaaccaatctgaga
agaacaacttaccttgtccttgatgaagctgataggatgcttgatatgggatttgaaccc
caaataaggaaaattgtggatcaaataagacctgataggcaaacactaatgtggagtgca
acttggccaaaagaagtaagacagcttgctgaagatttcctgaaagactatattcatatc
aatattggtgcactggaactgagtgcaaaccataacattcttcagattgtggatgtatgt
catgatgttgaaaaggatgaaaaacttattcgtctgatggaagagatcatgagtgagaag
gagaataaaaccattgtttttgttgaaaccaaaagaagatgtgatgaacttaccagaaaa
atgaggagagatgggtggcctgccatgggcatccatggtgacaagagtcagcaggaacgt
gactgggttctaaatgaattcaaacatggaaaagctcctattctgattgctaccgatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcatcgaattggaagaactgctcgcagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaaacaagtgagcgaccttatctctgtgctt
cgggaagctaatcaagcaattaatcccaagttgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgatcgtcgtgacagatactctgcaggc
aaaaggggtggatttaatacctttagagacagggaaaactatgacagaggctactctagt
ctgcttaagagagattttggggctaaaactcagaatggtgtttacagtgctgcaaattac
accaatgggagctttggaagtaattttgtatctgctggtatacagaccagttttaggact
ggtaacccaacagggacttaccagaacggttatgatagcactcagcaatatggaagtaat
gttgcaaatatgcacaatggtatgaaccaacaggcttatgcatatcctgctaccgcagct
gctgcgcctatgattggctatccaatgccaacagggtattctcaataa
DBGET
integrated database retrieval system
