Mastomys coucha (southern multimammate mouse): 116078136
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Entry
116078136 CDS
T07224
Symbol
Nup88
Name
(RefSeq) nuclear pore complex protein Nup88 isoform X1
KO
K14318
nuclear pore complex protein Nup88
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013
Nucleocytoplasmic transport
mcoc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116078136 (Nup88)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116078136 (Nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116078136 (Nup88)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116078136 (Nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
DUF659
Motif
Other DBs
NCBI-GeneID:
116078136
NCBI-ProteinID:
XP_031208977
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MAAAVGPVGDGELWQSWLPNHVVFSRLREGLKNQSPAEAEKPAASTSPSCPPLPPHLPTR
NLVFGLGGELFLWDAEGSAFLVVRLRGPSGGGVEPPLSQYQRLLCINPPLFEIHQVLLSP
TQHHVALIGTKGLMALELPQRWGKDSEFEGGKATVNCSTTPIAERFFTSSTSLTLKHAAW
YPSEMLDPHIVLLTSDNVIRIYSLREPQTPAKVVVLSEAEEESLILNKGRAYTASLGETA
VAFDFGPLVTVSKNIFEQKDRDVVAYPLYILYENGETFLTYVSLLHSPGNIGKLLGPLPM
HPAAEDNYGYDACAILCLPCVPNILVIATESGMLYHCVVLEGEEEDDQTLEKSWDPRADL
IPSLYVFECVELELALKLASGEDDPFASDFSCPIKLHRDPKCPSRYHCSHEAGVHSVGLT
WIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPT
MICITSTYECLIRPLLSTVHPASPPLLCTREDAEVAESPLRILSETPDSFEKHIKRILQR
SATNPAFLKNCSARSSEKDLAPPPEECLQLISRATQVFREQYILKQDLAKEEIQRRVKLL
CDQKRKQLEDLNYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKVLHSFHTQLPVL
SDSERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQRKMEKVLSPQKPTITLSAYQRKCI
QSILKEEGEHIREMVKQINDIRNHVNF
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgtggggcctgtgggcgatggggagctgtggcagagctggcttcctaac
cacgtcgtgttctcgcggctccgcgagggcctgaaaaaccagagtccagccgaagcggag
aaaccagcggcttcgacatcaccctcatgcccgcctctgccgccgcatttgccgacgaga
aacctggtcttcggcctcggaggggaactgttcctgtgggacgcagaaggcagcgccttc
ttggtggttcgccttcgaggccccagcggtggcggcgtggagccccctctctcccagtat
cagagattactttgcattaatccacccttgtttgaaattcatcaagtcttgttaagtcca
acacaacatcatgtagcacttataggaacaaaaggacttatggcattagaattacctcag
agatgggggaaggattctgaatttgaaggtggaaaagcaactgtgaattgtagcaccacc
ccgattgctgagagatttttcaccagttccacctctctgactctgaagcatgctgcatgg
tatccaagtgagatgctggatccacacatagtgctgctaacatcagacaacgtgataaga
atttactctctccgtgagcctcagacacccgctaaggtggttgtgctttcagaagcagag
gaggaaagtttaatactcaataaaggaagagcatatacggcatcgctaggagaaactgca
gtggcgtttgacttcgggccactcgtgaccgtctcaaagaatatatttgagcagaaagac
agagacgtagtggcgtatccactgtacatcctgtatgagaatggggagaccttccttacc
tacgtcagcctgttacacagcccagggaatattgggaaactgttgggcccactgcctatg
catcctgcagctgaagataactatggttatgatgcctgtgctatactctgtttgccctgt
gttcccaatatcttagtaattgcaactgagtcaggaatgctgtaccactgtgttgtacta
gagggagaagaagaagatgatcaaacgttagaaaagtcctgggatcccagggctgacctc
atcccttctctgtacgtgtttgagtgtgttgagttagagcttgccctgaaactggcgtct
ggagaggatgatccctttgcttcagacttttcctgtccaattaaactgcacagagatccc
aagtgtccctcgagataccactgcagccatgaagctggtgtgcacagtgtggggctgact
tggattcacaaactacacaaatttcttggatcagatgaagaagataaggatagtttacag
gagctcactgctgagcagaaatgctttgtggagcacattctttgtacaaagccattgcca
tgcaggcagccagctccaattcgaggattctggattgtcccagacatcctggggcccaca
atgatctgcatcaccagtacctatgaatgtctcataagacctttattaagtacagtccac
ccagcatctcctcccctgctctgtacccgagaagatgctgaagtggccgagtctccactg
cgcattttgtctgaaactccagattcctttgagaagcatattaaaagaatcttgcaacga
agtgccaccaacccagcatttctcaaaaactgttctgcaagatcatctgaaaaggattta
gctccccctcccgaggagtgtcttcagcttatcagcagagctacccaggtgttccgagaa
cagtacattctcaagcaggacctggccaaggaggagattcagcggagggtcaaattatta
tgtgaccaaaagaggaaacaactagaagatctcaattactgtcgagaggagaggaaaagt
ctccgggaaatggccgagcgcttagctgacaaatatgaggaagccaaagaaaaacaagaa
gatatcatgaacaggatgaaaaaagtgcttcacagttttcatactcagctcccagttctc
tctgacagtgagagagacatgaagaaagagttacagctgatacctgatcaacttcgacat
ctaggcaatgccatcaaacaggttactatgaaaaaagactatcaacagcgaaagatggaa
aaagtgctgagtcctcagaaacccaccattactctcagcgcctaccagcggaagtgcatc
cagtccatcctgaaagaagagggtgaacacataagggaaatggtgaagcaaatcaatgat
atccgaaatcatgtcaacttctga
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integrated database retrieval system
