Mastomys coucha (southern multimammate mouse): 116078944
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Entry
116078944 CDS
T07224
Symbol
Cnot6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116078944 (Cnot6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116078944 (Cnot6)
Enzymes [BR:
mcoc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116078944 (Cnot6)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116078944 (Cnot6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116078944 (Cnot6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_6
LRR_NXF1-5
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
116078944
NCBI-ProteinID:
XP_031210221
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMVSLRELHLNYNQLRVLPFELGKLF
QLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNLSGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKCSVLGECGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPQVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagaaaagtacgagccccctgaccctcggaggatgtacacaattatgtcctct
gaggaagcagcaaatggaaagaaatcacattgggcagagcttgaaataagtggaaaagta
agaagcttaagctcatctttgtggtcactaactcacttgacagctttgcatctgagtgac
aattccctgtcctgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcccataatcaaatccagagtttaccggcagaactcggaaacatggtatcactcagg
gagctccatttaaattacaaccagttacgagttctaccttttgagctgggaaaactgttt
cagttgcagactttaagcctgaaaggaaatccacttacccaggatatattgaatctctgt
ctggagccagatggaacaagaaggctactgaactacttgctcgataatttgtcaggtact
gcaaaaagaatttcaacagaacaaccacctccaagatcttggatcatgttacaagaacca
gacagaacaaggccaacagccttgttttctgtcatgtgctataatgttctttgtgataaa
tatgcgacccggcagttatacggctactgtccatcttgggcactaaattgggactacagg
aaaaaggccattattcaagaaattttgagctgcaatgctgatattataagtcttcaggaa
gtcgaaacagagcagtattacagtttttttctggtagaactgaaagaacgtggctataat
ggattctttagtcctaagtctcgagctaggactatgtctgaacaagaacgaaagcatgtt
gacggctgtgcaatattcttcaagacggaaaaattcactttggttcagaaacacacagtt
gaatttaatcagcttgcaatggcgaattcagaagggtctgaagccatgttgaacagagtc
atgacaaaggataacattggagttgcagtactgctagaacttcgaaaggagttgattgaa
atgtcatctggaaaaccacatctgggaacagaaaaacagcttattctcgtggctaatgct
catatgcattgggacccagaatactcagatgtgaagttggtacaaactatgatgttcctc
tcggaagtgaagaatattattgataaagcctctcgaagcctcaaatgcagtgtactggga
gagtgtggaactattccgctcgtgttatgtgcagatctgaattctttgccagactctggt
gttgtagagtatttgagcactggtggggtagaaacaaatcataaagacttcaaggaactg
aggtacaatgaaagtcttacgaacttcagctgcaatgggaagaatgggatgaccaatgga
aggatcactcatggtttcaagttaaagagtgcctatgagaatggcctgatgccttacaca
aattatacatttgatttcaagggtataattgactacatcttctattctaaacctcagctg
aatactttagccatcctgggacctctggaccaccattggctagttgagaataacatcagc
ggatgcccacatccacttattccctccgaccacttctcactttttgcacaattggagctc
ttactgcctttcctgccccaagttaatggcattcaccttcctggcaggaggtag
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