Mastomys coucha (southern multimammate mouse): 116079512
Help
Entry
116079512 CDS
T07224
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116079512 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116079512 (Prpf40b)
Spliceosome [BR:
mcoc03041
]
Complex A
U1 snRNP components
U1 related factors
116079512 (Prpf40b)
Complex B
116079512 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
116079512
NCBI-ProteinID:
XP_031211076
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MGGVEPWGGDHKVTIHPLCFVLGIQGLEVGEMEGKDFRRARPGRPLFLLLFLTVLLIKEP
LTLGWNSIGGRELERDGREETGIFALSLHPKVSGSTASEVCHCLLALSLSLPPLLGICVL
ATMPKNSWITVFLSSEEGDSLNAFYFSMMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNSQSQE
SRWTRPKDLEDLEALVKQESTGKQQTQQLHPPQPQPDPPPIPPAPIPVPMALLEPEPGRS
EDCDVLEAAQPLEQGFLQREEGPSSSTGQHRLPQDEEEAKPEPERSGLSWSNREKAKQAF
KELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRA
KEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLFFLAKKEK
EQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALIC
FEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAV
STDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFA
HVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPA
LELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGK
KHHRKRSHSPSVSRQGSESDEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAVL
GGPGSPSSHLVLGSDHGLRKTKKPKKKTKKRRHKSTSPDSETDPEDKAGKQSEDREQEQD
REPRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgggtggtgttgagccctggggtggggaccataaagtgacaattcaccctctttgtttt
gtccttgggatacaagggctggaggtaggagagatggaagggaaagacttcaggagagca
aggcctgggaggcctctttttcttttattattccttactgtgctccttataaaagagcct
ctgactttgggctggaatagcattggtggtcgtgagttagaaagggatgggagggaagag
actgggatctttgccttgtccctccacccgaaggtttcagggagtacagcctccgaagtc
tgtcactgtctccttgccctttccctctccctccctcccttgttaggaatctgtgtgctt
gccactatgcccaagaactcctggattaccgtctttctcagtagtgaggagggagacagt
cttaacgccttttacttctcaatgatgccccctccagggcttccacctccttttcctccg
atggggcttccccctatgagtcagagaccaccagccattccccccatgccacctggcata
ctgcccccaatgcttccaccaatgggggcaccaccaccacttacacagataccaggaatg
gtccctcccatgatgccggggatgctgatgccagcggtgcctgtcactgcagcgacggct
ccgggtgcggacaccgccagctctgccgtggctgggacaggccctccgagggccttatgg
agtgaacacgtggcccctgatgggcgcatctactactacaatgctgatgataagcaatcc
gtgtgggagaagcccagcgtactcaagtctaaggcagagctactactgtcgcagtgtccc
tggaaagagtacaagtcagacacagggaagccttactactacaatagccagagccaggag
tcacgctggacccggcccaaggacctggaggacctggaagccctcgtcaaacaagagtct
acaggaaaacagcagacccagcaactacacccacctcagccacagcctgaccctccacct
atacctccggctcccatcccagtgcctatggccctcctggaacctgaaccaggtcgaagt
gaagactgtgatgtgctggaagctgcccagcccctggagcagggcttcctgcagcgggag
gagggccccagcagttctactggacagcatcggctaccacaggatgaggaggaagctaag
ccagaacccgagcgatctggcctcagttggagcaaccgggagaaggcaaagcaggcattc
aaagaactgctaagggacaaggctgtcccttccaatgcttcatgggaacaggccatgaag
atggtggtcactgacccccgttacagtgccttgcccaaactaagtgagaagaagcaggcg
tttaatgcttacaaggctcagcgggagaaagaggagaaagaggaggcccggctgagagcc
aaggaggccaagcagaccctgcagcatttcctggaacagcatgaacgcatgacctccacc
acccgctaccggcgggcagaacagacttttggggacctggaggtctgggctgtggtccct
gagagagatagaaaagaagtttatgatgacgtgctcttcttcctggccaagaaggagaag
gaacaagccaagcagctccggcgtcgaaatatccaggccctgaagagcatcctggatggg
atgagtagtgtcaacttccaaaccacctggtcccaggcccagcagtacctcatggataac
cctagctttgctcaggaccagcagctgcagaacatggacaaagaagatgcacttatctgc
tttgaggagcatatcagagctctggagagagaggaggaggaagagcgggaacgggcccgg
cttcgggagcggcgacagcaacggaagaatcgggaggcctttcagactttcctggatgag
ctgcatgagacagggcagctgcactccatgtccacctggatggagctgtacccagcagtc
agcactgatgttcgctttgccaacatgctgggccagccgggctctactcctctggacttg
ttcaagttctatgtggaggagttgaaggctcgattccatgatgagaagaagatcataaag
gatattcttaaggaccggggcttctgtgtggaggtgaacacagcatttgaggacttcgct
cacgtcataagctttgacaagagggctgctgcgctggacgcaggcaacatcaagctgacc
ttcaatagtctgctggaaaaagcagaggcgcgggagagggagcgggaaaaggaggaggcc
cgaaggatgcggcgcagggaggctgcctttcggagcatgctgaggcaggccgtgcctgct
ctggagctgggcactgcctgggaagaggtccgtgagcgctttgtgtgcgactcagccttt
gagcagatcaccttggagtcggagcggatccggctcttccgagagttcctgcaggtgctg
gagcagactgaatgccagcacctccacaccaaaggccgaaagcatggcagaaagggcaag
aaacaccatcgcaagcgttcacactcaccctcagtgagtcggcagggctctgagtcagat
gaagaggagctgcccccaccatccctccggccccccaagcggaggaggcggaacccctca
gaatctggctctgagccctcctcctcacttgattcagttgaaagtgggggtgctgttctt
ggaggaccaggctccccatcttcccaccttgttcttgggtcagatcatggtcttcggaaa
accaagaaaccaaaaaagaaaactaagaaaagaagacacaagtcgaccagtcctgacagt
gagacggaccccgaagacaaagctggtaagcagagtgaagacagagaacaggaacaggac
agggaaccccggcaggcagagctccctaaccgttccccaggcttcggaatcaagaaggag
aagacaggctgggacacatcagaaagcgagctgagtgagggggagctggagaggcgaagg
cggacactcctacagcagctggatgaccaccaatga
DBGET
integrated database retrieval system
