Mastomys coucha (southern multimammate mouse): 116079575
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Entry
116079575 CDS
T07224
Symbol
Prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116079575 (Prpf39)
Spliceosome [BR:
mcoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116079575 (Prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
Motif
Other DBs
NCBI-GeneID:
116079575
NCBI-ProteinID:
XP_031211109
LinkDB
All DBs
Position
Unknown
AA seq
665 aa
AA seq
DB search
MQNSHMDEYRNSDNGSTGNSSEVAVVEHPDFSTEIMNVTEMEQSPDASPSAHASTEENEM
ANAVDLPVTETEGDFPPEFEKFWKTVEMNPQDFTGWVYLLQYVEQENHLMAARKAFDKFF
VHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP
ETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSH
HFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL
ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF
EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPM
AHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAI
KNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDL
KQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQD
TLKRKAENGSEEPEEKKAHTEDMSSAQIIDGDLQANQAAYNYSAWYQYNYQNPWNYGQYY
PPPPT
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcccacatggatgagtacaggaactctgataatggaagcacaggcaacagt
tcagaggtagcagtagtagagcatccagattttagtactgagattatgaacgttacggag
atggaacagtcacctgatgcctcccccagcgcacatgcatctacagaagaaaatgaaatg
gcaaatgctgtggaccttccagtgacagaaacagaaggagacttccctccagagtttgaa
aaattttggaaaacagtagaaatgaatcctcaggattttacaggctgggtatatttgctt
cagtatgtagaacaggagaatcacttgatggctgccaggaaagcatttgacaaatttttc
gtacactacccatattgctatggttactggaaaaagtatgcagaccttgaaaagcgacat
gacaacattaaacaatcagatgaggtttatcgacgggggcttcaggcaatacctcttagt
gttgatctttggatacattatataaacttcttaaaagaaacattggaccctggtgatcct
gagacaaacagtacaataagaggaacttttgagcatgctgttctagctgcaggaacggat
tttcgatctgacaaattatgggaaatgtatataaattgggagaatgaacagggaaatctg
agagaagttacagctgtatatgatcgtattcttggtattccaacacagctgtacagtcat
cattttcagagatttaaagaacatgtacaaaataacttgcctagagatcttttaactggt
gaacagtttattcagctgagaagggaactagcttctgtaaatggacacagtggtgatgat
ggacctcctggtgatgaccttccatcaggaattgaagacataactgatccagcaaagcta
attactgaaatagaaaacatgagacatagaatcattgaaattcatcaagaaatgtttaat
tataatgagcatgaagttagtaagaggtggacatttgaagaaggtattaaaagaccttat
tttcatgtgaaaccattggaaaaggctcagctaaaaaactggaaagaatacttagaattc
gaaattgaaaatgggactcatgaaagagttgtggttctctttgaaagatgtgtcatatct
tgtgccctctatgaggagttttggattaagtatgccaagtacatggaaaaccatagcatt
gaaggagtgaggcatgtcttcagcagagcctgtactgttcatctcccaaagaaacccatg
gcacacatgctctgggcagcttttgaggaacaacaggggaatattaatgaagccaggatc
atcttgagaacgtttgaagaatgtgttctaggattggcaatggttcgattgcggagagta
agtttagaacgacggcatggaaatatggaagaagctgaacatttgcttcaagatgctata
aagaatgccaaatcaaataatgagtcgtcattttatgctatcaaactagcccgacatctt
ttcaaaatacagaaaaatcttccaaaatcaagaaaggtacttttggaagcaatcgaaaag
gataaggagaacacaaagttatacctcaatttacttgaaatggaatacagttgtgacctc
aagcaaaatgaagaaaatatcctcaattgctttgacaaagccatacatggttcattgcct
attaaaatgagaattacattttctcaaagaaaagtggaattccttgaagattttggttca
gatgttaataagcttctgaatgcatatgatgaacatcaaacacttctaaaagaacaggat
actttaaaaagaaaagctgaaaatggctcagaagaaccagaagaaaagaaagcacacaca
gaagatatgtcatcagcacagatcattgatggggatttacaggcaaatcaagctgcatat
aattacagtgcctggtatcagtacaattatcagaatccttggaattatggacagtattat
cctccacctccaacctga
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