Mastomys coucha (southern multimammate mouse): 116081424
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Entry
116081424 CDS
T07224
Symbol
Ptch1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04024
cAMP signaling pathway
mcoc04340
Hedgehog signaling pathway
mcoc04360
Axon guidance
mcoc05200
Pathways in cancer
mcoc05205
Proteoglycans in cancer
mcoc05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116081424 (Ptch1)
04024 cAMP signaling pathway
116081424 (Ptch1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
116081424 (Ptch1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
116081424 (Ptch1)
05205 Proteoglycans in cancer
116081424 (Ptch1)
09162 Cancer: specific types
05217 Basal cell carcinoma
116081424 (Ptch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MENTAL
Motif
Other DBs
NCBI-GeneID:
116081424
NCBI-ProteinID:
XP_031213818
LinkDB
All DBs
Position
Unknown
AA seq
1434 aa
AA seq
DB search
MASAGNAAGALGRQAGGGRRRRTGGPHRAAPDRDYLHRPSYCDAAFALEQISKGKATGRK
APLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGG
RVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYN
RQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPL
RWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNST
KPLDVALVLNGGCQGLSRKYMHWQEELIVGGTVKNATGKLVSAHALQTMFQLMTPKQMYE
HFRGYDYVSHINWNEDRAAAILEAWQRTYVEVVHQSVAPNSTQKVLSFTTTTLDDILKSF
SDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGIS
FNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSIS
NVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF
TSPCVSRVIQVEPQAYTEPHSDTRYSPPPPYSSHSFAHETHITMQSTVQLRTEYDPHTHV
YYTTAEPRSEISVQPVTVTQDTLSRQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSS
FAEKHYAPFLLKPKAKVVVILLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQ
FKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPQMWLHYFRDWLQG
LQDAFDSDWETGRIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRLVDADGII
NPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQF
PFYLNGLRDTSDFVEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLAISV
VLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGV
EFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFA
VLAILTVLGVLNGLVLLPVLLSFFGPCPEVSPANGLNRLPTPSPEPPPSVVRFAVPPGHT
NNGSDSSDSEYSSQTTVSGISEELRHYEAQQGTGGPAHQVIVEATENPVFARSTVVHPDS
RHQPPLNPRQQSHLDSGSLSPGRQGQQPRRDPPREGLRPPPYRPRRDAFEISTEGHSGPS
NRDRSGPRGARTHNPRNPASTAMGSSVPSYCQPITTVTASASVTVAVHPPPGPGRNPRGG
PCPGFESYPETDHGVFEDPHVPFHVRCERRDSKVEVIELQDVECEERPWGSSSN
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctggtaacgccgccggggccctgggcaggcaggccggcggcgggaggcgc
agacggaccgggggaccgcaccgcgccgcgccggaccgggactatctgcaccggcccagc
tactgcgacgccgccttcgctctggagcagatttccaaggggaaggctactggccggaaa
gcgccgctgtggctgagagcgaagtttcagagactcttatttaaactgggttgttacatt
caaaagaactgcggcaagtttttggttgtgggtctcctcatatttggggccttcgctgtg
ggattaaaggcagctaatctcgagaccaacgtggaggagctgtgggtggaagttggtgga
cgagtgagtcgagaattaaattatacccgccagaagataggagaagaggctatgtttaat
cctcaactcatgatacagactccaaaagaagaaggcgctaatgtcctgaccacagaggct
ctcctgcagcacctggactcagcactccaggccagtcgtgtgcacgtctacatgtataac
aggcaatggaagttggaacatttgtgctacaaatcaggggaactgatcacagagacaggt
tacatggaccagataatagaatacctttacccttgcttaatcattacacctttggactgc
ttctgggaaggggcgaagctacagtcgggaacagcatacctcctaggtaagcctccttta
cggtggacaaactttgaccccttggaattcctagaagagttaaagaaaataaactaccaa
gtggacagctgggaggaaatgctgaataaagccgaagttggccatgggtacatggaccgg
ccttgtctcaacccagccgacccagattgccctgccacggcccccaacaaaaattcaacc
aaacctcttgatgtggcccttgttttgaatggtggatgtcaaggtttatccaggaagtat
atgcattggcaggaggagttgattgtgggtggtaccgtcaagaacgccactggaaaactt
gtcagtgctcatgccctgcaaaccatgttccagttaatgactcccaagcaaatgtatgaa
cacttcaggggctacgactatgtctctcacatcaactggaatgaggacagggcagccgcc
atcctggaggcatggcagaggacttatgtggaggtggttcatcaaagtgttgccccaaac
tccactcaaaaggtgctttccttcaccaccacgaccctggacgacatcctaaaatccttc
tctgatgtcagtgtcatccgagtggccagtggctatctactgatgcttgcctatgcctgt
ttaaccatgctgcgctgggactgctccaagtcccagggtgccgtggggctggctggtgtc
ctgttggttgcgctgtcagtggctgcaggattgggcctctgctccttgattggcatttcc
tttaatgctgctacaactcaggttttgccatttctcgctcttggtgttggtgtggatgat
gtcttcctcctggcccatgcgttcagtgaaacaggacagaataagaggattccatttgag
gacaggacaggggagtgcctcaagcgcactggagccagcgtggccctcacctccatcagc
aatgtcaccgccttcttcatggctgcattaatccctattcctgctcttcgagcgttctcc
ctccaggctgctgtagtggtggtattcaattttgccatggttctgctcatttttcctgca
attctcagcatggatttatacagacgtgaggacagaagattagatattttctgctgtttc
acaagcccctgtgtcagcagggtgattcaagttgaaccacaggcctacacagagcctcac
agtgatacccgctacagccctccacccccgtacagcagccacagcttcgcccatgaaacc
cacatcactatgcagtccaccgttcagctccgaacagagtacgaccctcacacacacgtg
tactacaccaccgccgaaccgcgctccgagatctctgtacagcccgtcaccgtcacccag
gacaccctcagccgtcagagccctgagagtaccagctccacgagggacctgctttcccaa
ttctcagactccagcctccactgcctcgagcccccctgcaccaagtggacactctcttca
tttgcggagaagcactatgctcctttcctcttgaaacccaaagctaaggttgtggtaatc
cttcttttcctgggcttgctgggagtcagcctttatgggaccacccgagtgagagacggg
ctggacctcacggacattgtcccccgggaaaccagagaatatgacttcatagctgcccag
ttcaagtacttctctttctacaacatgtatatagttacccagaaagcagactacccaaat
atccaacacctgctttatgaccttcataagagtttcagcaatgtgaagtatgtcatgctg
gaggagaacaagcaacttccccaaatgtggctgcactactttagagactggcttcaagga
cttcaggatgcgtttgacagtgactgggaaactgggaggatcatgccaaacaattataaa
aatggatcggatgacggggtcctcgcttacaaactcctggtacaaactggcagccgagac
aagcccatcgacataagtcagttgactaaacagcgtctggtggatgcagatggcatcatt
aatccgagcgctttctacatctacctgaccgcttgggtcagcaacgaccctgtagcttac
gctgcctcccaggccaacatccggcctcaccgcccagagtgggtccatgacaaagccgac
tacatgccagagaccaggctgagaatcccagcagcagagcccatcgagtatgctcagttc
cctttctacctcaacggcctacgagacacctcagactttgtggaagccatagaaaaagtg
agagtcatctgtaacaactatacaagcctgggactgtccagctatcccaatggctacccc
ttcctgttctgggagcagtacatcagcctgcgccactggctgctgctagccatcagtgtg
gtgttggcctgcacgtttctagtgtgcgcagtcttcctcctgaacccctggacggccggg
atcattgtcatggtcctggccttgatgaccgttgagctcttcggcatgatgggcctcatt
gggatcaagctgagtgctgtgcctgtggtcatcctgattgcgtctgtcggcatcggagtg
gagttcaccgtccatgtggctttggcctttctgacagccattggggacaagaaccacagg
gccatgctcgctttggagcacatgttcgctcccgttctggacggtgctgtgtccactctg
ctgggtgtcctgatgctcgcagggtctgagtttgatttcattgtcagatacttctttgct
gtcctggccattctcaccgtcttgggggttctcaacggactggttctgctgcctgttctc
ttatccttctttggcccatgtcctgaggtatctccagccaatggcctaaaccggctgccc
actccttcgcctgagccgcccccaagtgtcgtcaggtttgctgtgcctcctggtcacacg
aacaatgggtctgattcctctgactcggagtacagctctcagaccacggtgtctggcatc
agtgaggagctcaggcactatgaagcacagcagggcactggaggtcctgcccaccaagtg
attgtggaagccacagaaaaccctgtctttgcccgatccactgtggtccatcctgactcc
agacatcagcctcccttgaaccctcggcaacagtcccacctggactctggctccttgtcc
cctggacggcaaggccagcagcctcgaagggatccccccagagaaggcttgcggccaccc
ccttacagaccgcgcagagacgcttttgaaatttctactgaagggcattctggccctagc
aatagggaccgctcagggcctcgtggggcccgtactcacaaccctcggaacccagcgtcc
actgccatgggcagttctgtgcccagctactgccagcccatcaccactgtgacggcttcc
gcttctgtgactgttgctgtgcaccccccgcctggacctgggcgcaacccgagaggggga
ccctgtccaggcttcgagagctaccctgagactgatcatggggtatttgaggatccccac
gtgccttttcatgtcaggtgtgagaggagggactcgaaggtggaggtcatagagctacag
gacgtggaatgtgaggagaggccatgggggagcagctccaactga
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integrated database retrieval system
