Mastomys coucha (southern multimammate mouse): 116084122
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Entry
116084122 CDS
T07224
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116084122 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcoc04121
]
116084122 (Slx4)
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116084122 (Slx4)
Ubiquitin system [BR:
mcoc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
116084122 (Slx4)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116084122 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
116084122
NCBI-ProteinID:
XP_031216830
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MEESDDDFKELCASFFQRVKKNATKEASGERTRRKASGRTQNRGKRREASHVVARSKALQ
GPSEKRPRLGSQTPRTKKPGAPRSQEGDPALPENAKGDVLAPTPDQPVLCERAQSIQTES
APNGDSQPLPSWFTTTTTTGMPSPSKPRASELVLQRMKQFKRADPERLRHASEESTLKTA
LGENVLRSPQAETVVENEYKPKLHTTDSDAAMALALQQEFRREEASSRHDSLEEKGLFFC
QMCQKNLSAMNVTRREQHVNRCLDEAEKAQRPAPPQIPDCPICGKPFLTTKSRISHLKQC
AARMEVGPQLLLQAVRLQTAQPEVGSSPQVPSFSNHVGGLKQKGVTNKREPQRKWKVNKP
EAPSEDLLVAMALSRSEIEHCPVVPPLRLENAFSEKIRIGAEKKSRRKRPPVCPPQLVTQ
DSETTSRQIEDRVAQLLSEEIEPSCTPPLLASKIFKEELEHAGWRVQLPEGKQNFLWDLS
SLTGTWAKESFYTVGLLPPVVSQCPTKEPELPLELPKQQEPSTQRPPASQSSLPVSHSPK
NQLLSSSQRERQALQDLVDLAVEGLSSSARPRSLGVPTGLDVVPSSLPLTGFVLPCKKSL
KRDDSASLSLGLLVTDFGAMVNNPHLSDVQFQLDSGEVLYAHKFVLYARCPLLIQCVNAE
GFSAVEDGDLTQRVLLSDVSSETAHAFLNYLYMADTDMPPSLAPDLRSLALRFGVSDLVQ
LCEQVPAMADLEGEQLEASEDCESRAFQELLRSVWVDKEEEAETLLNSEVREEEKVDEAE
MEEIYEFAATQRKLLLQGERAADTDGSTPQRGEDRPVSEPSLAGVQSNRQLENTEQMESS
GLGKEEALASWEHEGSSIPLQDQCPAWAGKAEAQDALEKAIDHPSFCSPSDSHQGRGKEY
LPFYPNKAHDCKQLLPSNPRVSSELSQITVDHEEQSDHVRERQADMAQAPTPHPCGLLSQ
SSVGGSPSQSRLHPHHTSNLSPSVSQSHSSISKVTPPSSLSPVTPTKQRRDSNIHTLQKD
AGHHKGKQSSPILGRRNRGILISPAKSPPIDLTQSVPEPLSPRAQNPLRHIKEDEVILLL
DSDEEQELEHTKTESVSKDSPEGRKVPEVSPRSSELFSVIDVEEDHEHFQSPLKREVGLQ
QGEEGQLGNQSTLGRRDIPWLFCSQKNSLDEDSTTDTSWLVPATPGVSKSRDCSSQTQIK
SLKTRTLSDETAQHTPRPNLDRRTVLEAAQQFSVIMPHTQPVTLGASDSGRQAYRSPSHP
YLRRHRVSSSQPSCSSPDFTRWSQKSFSPRPCLPNPPAADDVVEVGDSDDEQEVASHQGN
SSPVLDVNPPYPMGDYCWNEPLSPIPIDHLNLERTGPLTTSSPSSQAPEALHSDDCHSPG
LDTTPIRGSYGALRESQEQSSQAGSPESSKLSVLSQALWDDWDEKEGQSPEAPPVAHVLS
ARARKPDRKPETPKGASQKKKLPPKVPITPMPRYSIMETPVLKKELDRFGVRALPKRQMV
LKLKEIFQYTHQTLESDSEDEIQSSQIPQQVPGSQASTTETCNPSRSGSYTQLRATADLG
TQRSKGSTKSKSLQHQEKQLSESISQPNRLLAGEPSCPDGNAQLPASQESVATSVDGSDN
SFSSQSLSGEFGAAFESSGEDKDDGDGVTASQVAIRAADTEEAVRRYICSKPALHRKVLM
YQPLELAELQAELKHSGIPVAMGKLLDILDAQCITFTTAAARKEKLKQKRRQPSGRKKKD
QK
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtcagatgatgatttcaaagaactctgtgccagctttttccaaagggtgaaa
aaaaatgcgaccaaagaagcgtcaggagagaggacaaggcggaaggcctccgggcgcact
cagaacagaggcaagcggagagaagccagccacgttgtcgccaggagcaaagcccttcaa
ggtccttcagagaagagaccgcgattaggcagccagacccctaggactaaaaagccaggg
gcacccagatctcaagaaggggacccagctctccccgagaatgcaaagggagatgttctt
gctcctaccccagatcagcctgtgttgtgtgaaagagcacagagcattcagacagagagt
gctcccaatggcgactcccagccccttccatcctggttcacaacgacaacgacgactggt
atgccaagtccctccaagccgagagcctcagagcttgttctgcaacggatgaagcagttc
aagagggcagaccctgagcgcttgagacatgcctcagaagaatctaccctaaagaccgca
ctgggagaaaacgtcctaaggagccctcaggcggagacagtggtagaaaacgagtataaa
cccaagcttcataccacagacagcgatgctgccatggcactggccttacagcaggagttt
agaagggaggaagcatcctcacgccatgacagcctggaggagaaggggttgttcttctgt
caaatgtgtcagaaaaacctctcagcaatgaatgtgactcggagggagcaacacgtgaac
agatgcctagatgaggcagagaaggcacagagacctgctccacctcagatccctgattgt
ccaatatgtggtaaaccattcctcaccaccaagagccgaatcagtcacctgaagcagtgt
gcagcgaggatggaagtgggtccccagctcctgcttcaggcagtgaggctgcagacagct
cagccagaggtgggcagtagccctcaggtacccagtttcagcaaccatgttggaggtttg
aaacagaaaggagtcaccaacaagagggagccacagaggaagtggaaagtcaataagcct
gaggctccgtctgaagatctgctggtagccatggctctgtctcgctctgagattgagcac
tgtccagttgtgcccccactcagactggaaaatgctttttctgagaagataaggatagga
gcagagaagaaaagtcgcaggaagagacccccagtgtgccctccacagttggtaacccaa
gactctgagaccacaagtagacagattgaggatcgtgttgcccagcttctgtcagaggaa
atagaaccgtcttgcactccaccacttcttgccagcaagatttttaaggaagaattggaa
catgcaggctggcgagtgcagctgcctgaagggaagcagaattttctgtgggatctcagt
tcccttacaggaacctgggctaaggagtccttctacacagtgggcctgcttcctccagtt
gtatcccagtgtcctaccaaggaacccgagctaccactggagctgcccaagcaacaagag
ccaagtacacaaaggccacctgcttcgcagagcagccttcctgtgagccacagccccaag
aaccagctgctgtcctccagccagagggagcgtcaagcccttcaggaccttgtagacttg
gcagtggaggggctgagctctagcgcacgacccaggagtctaggtgtgcccacagggttg
gacgtggtacctagcagccttccactgacggggtttgtcctgccatgtaagaagagcctg
aagagggatgacagtgcctcactctctcttggattattggtgacagactttggggccatg
gtcaataatccacacctgagtgatgtccagttccagcttgacagtggagaggtgctttat
gcccacaagtttgtgctttatgctcgatgcccacttcttattcagtgtgtaaatgctgaa
ggcttctctgctgtagaggacggggatctgacccagcgtgtcctgctgagtgatgtgagc
tcggagaccgcccacgcatttctgaactacctgtacatggcggacactgacatgcctccc
agcctggctcctgatctgcgttccctggctctaaggtttggtgtgagtgaccttgtccag
ctgtgtgaacaagtacctgccatggcggacttagagggagagcagctagaggccagtgag
gattgtgagagcagagctttccaggaacttctgaggtcggtgtgggtagacaaagaggaa
gaagcagagactctgctgaactccgaggtccgtgaagaagaaaaagtggatgaagcagaa
atggaagagatatatgagtttgcagcgacacagaggaagctgcttctccagggggaaaga
gcggcagacacagatgggagcactccccagcgcggggaggacaggccagtatccgagcct
tccctggcaggtgtccagagtaacagacagctagaaaatacagagcaaatggagtcatct
gggttaggaaaagaagaggcactagccagctgggaacacgaaggaagttccattccactg
caggaccagtgcccagcctgggcagggaaagcagaggcccaggatgcactggagaaggca
attgaccaccccagcttctgcagcccttctgacagccaccaagggagggggaaagaatac
ttgcctttttacccaaacaaggcccatgactgcaaacagctccttccatcaaatccaaga
gtgtcatctgaactgtcacaaataacagttgatcatgaagagcagagtgaccatgtcagg
gagaggcaggcagacatggcccaggcacctactccacacccatgtggtcttctgtcacag
tcttctgtgggtggaagtcccagccagtcacggcttcacccacaccacacaagcaatttg
tccccctcagtgtcccagtcacacagtagcatttccaaagtgacgcccccaagctcattg
tctccagttacaccaactaagcagaggagggacagtaacattcacacattacagaaagat
gctggccaccacaaaggcaaacaaagtagccccatattgggacgcagaaataggggcatc
ctgatttccccagcaaagtctccacccattgacctgacacagtcagtaccggagcccctg
agccccagggcccagaatcctctgcgtcacataaaggaggacgaggtcatcctgttactg
gattcagatgaggagcaggagctggagcacaccaagacagagtcagtctctaaagattcc
ccagaaggaaggaaagttccagaagttagccccaggtcctctgaactgttttcagtcatt
gatgttgaagaagatcatgaacatttccaaagcccactgaagagagaggtggggctgcag
cagggagaggaggggcagctgggaaaccagtccacgctgggccgcagagacatcccctgg
ctgttctgcagccagaaaaacagcctggatgaggacagcactacagatacctcttggctg
gtgcctgccactccaggggtcagcaagagtcgtgattgctcatcacagactcaaatcaaa
agccttaagaccagaactctttcagatgaaactgctcagcacacacccaggcctaactta
gaccgtaggactgtgctggaagcagcccagcagttctctgtgatcatgccacacacacag
cctgttactctaggagcctctgatagtgggagacaggcctatcgaagcccttcccatccc
tacctcaggcgccacagggtctcctcttcacagccatcatgttctagccctgattttacc
aggtggtcccagaaatccttctcacctagaccatgcctgccaaatccgcctgcagctgat
gatgtggtagaagttggggacagtgatgatgagcaggaggtggcttcccatcaaggaaac
agcagccccgtgctagatgttaaccccccatatcccatgggtgactactgttggaatgag
cctctctcaccaattccaattgaccacttgaatctggagaggaccggccccctgaccaca
agcagtcccagcagtcaggccccagaggctctgcacagtgatgactgccactccccagga
cttgacaccacccccatccgaggaagctatggtgctctgagagagtctcaggagcagtcc
tcacaggctggctctccagagagcagcaaactgagtgtccttagccaggctctgtgggac
gactgggacgagaaggaaggacagtctccagaggctccacctgtggcccacgtgctgagt
gccagagctcggaagccagacaggaagccagagacaccaaaaggtgctagccagaagaag
aagttgccccccaaagtgcctataactccaatgccaaggtattcgatcatggagaccccg
gtgctgaagaaagaactggacaggtttggagttcgtgctctgcccaaacgccagatggtt
ctaaaactgaaggagattttccagtacactcaccagactctggagtcagactctgaggat
gagatccagtcctcccagataccccaacaggtacctggtagccaggcatctaccactgag
acctgcaacccttcaaggtcaggaagttacactcagctcagggccactgcagatcttggg
actcaaagatccaagggctctactaaaagcaagagtcttcaacatcaagagaagcagctc
agtgaaagtatttcccagccaaataggttgctagctggggagccttcatgccctgatggc
aatgcccagctcccagcctcccaggaatccgtggctacctctgtggatggcagtgacaac
tcctttagctcgcaaagcttgtctggtgagtttggagctgcctttgagtcttcaggtgaa
gacaaggacgacggggacggggtcactgcatcacaggtagcaatccgggccgcagacaca
gaggaggcggtgaggcgctacatctgctccaagcctgccctgcacaggaaggtcctgatg
taccagcctctggagctggctgagctgcaggctgagctgaagcacagtggcatccctgtg
gccatgggcaagctgctggacatcctggatgctcagtgcatcaccttcacgactgccgca
gcccgaaaggagaagctcaaacagaagagacgacagccctcaggccgaaagaaaaaggat
cagaaatga
DBGET
integrated database retrieval system
