Mastomys coucha (southern multimammate mouse): 116084935
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Entry
116084935 CDS
T07224
Symbol
Pcdh9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
116084935 (Pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcoc01009
]
116084935 (Pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcoc04515
]
116084935 (Pcdh9)
Protein phosphatases and associated proteins [BR:
mcoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116084935 (Pcdh9)
Cell adhesion molecules [BR:
mcoc04515
]
Cadherins
Protocadherins
116084935 (Pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
MAP17
RCR
EphA2_TM
V_ATPase_I
DUF6249
LYRIC
7tm_3
Motif
Other DBs
NCBI-GeneID:
116084935
NCBI-ProteinID:
XP_031218100
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVRVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFNREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDED
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLVLVFLYVNDTAGN
TSYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPVEPEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKND
NIPVTHQKCPGSTGFHIRENEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDTNRNQFNDRKQYGS
NEGHFNNGSHMADIPLANLKSYKQAGGTIESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattct
gcaatagcccaagaacttatttacactattagagaggaattgcctgaaaatgtgcccata
ggaaatataccaaaggatctgaatatctctcacatcaacgctgccacagggaccagtgcc
agccttgtctacagactggtttctaaagctggggatgcccctctggtgagagtatccagt
agcactggggagattttcacaacctccaacagaatagacagagagaaactctgtgccgga
gcttcttatgctgaggagaatgagtgcttctttgaacttgaggtggtgatcctccccaat
gactttttcaggctgatcaaaatcaagatcattgtcaaggataccaatgataatgccccc
atgtttccatctcctgtcatcaatatttccatcccagagaacactttgatcaacagccgc
tttccaatcccatcagccacagatcctgacacaggcttcaatggggtacagcattatgag
ttgctaaatggacagagtgtttttggactggatatagtggaaactccagagggagaaaag
tggccgcaattgattgttcagcagaacttggatagagaacaaaaagatacctatgtgatg
aaaatcaaagtggaggatgggggcacgccacagaaatccagcacagccatactccaggtc
acagtaagtgatgtcaatgacaacaggccagtgtttaaagagggtcaagtagaagtgcat
attccagagaatgctcctgtggggacctctgtaattcagctccatgctactgatgcagac
ataggcagtaatgctgaaatccggtacatttttggtgcccaggtcgcccctgcaaccaaa
agactctttgctttaaataacacaactgggctgataacagttcagaggtccttagatagg
gaagagacagccattcacaaagtgacagtgctggctagtgacggcagctccactcctgcc
agagccaccgttaccatcaatgtcacagatgtaaatgataatcctccaaacatagacctc
aggtacatcataagtcccatcaatggcacggtgtatctctctgagaaagatccagtcaat
acaaagattgccctaattacagtttcagataaggacacggatgtgaatggcaaagtgatc
tgttttattgaaagagaggtcccatttcatctgaaggcagtatatgacaaccagtatctg
ctagagacctcttctctgctggactatgagggcaccaaagaattcagctttaaaatcgtt
gcctctgattctgggaagcccagtttgaatcagactgccttggtaagggttaagcttgag
gatgaaaatgacaacccaccaattttcaaccagcctgtaattgagctgtcagtttccgaa
aacaaccgacgtgggttatacttaacaactattagtgctacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggaccgaatgcctccttctttgatctggacagaaag
acaggagttttgacagcctctagagtctttaacagggaggaacaagagcggttcattttt
acagtgactgccagggacaatgggacccctcccctccagagccaagcagcagtgatagtt
actgttctggatgagaatgacaatagccccaagtttactcataatcattttcagtttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtaatcacagtcacagatgaagat
gctggagagaataaagctgtgactctctctattctcaatgacaatgaaaattttgtgttg
gatccctactcgggagtcataaagtccaatgtctcctttgatagagagcagcagagttcc
tacacgtttgatgtcaaagccactgatggaggacagccaccacggtcctctactgcaaaa
gtaactatcaatgtcatggatgtcaatgacaatagtccagttgtcatttctccaccatcc
aacacctcctttaagttggtgcccctctcggccattcctggttctgtggttgctgaagtg
tttgcagtagatattgacactggaatgaatgcagaacttaagtatactatagtgagcggg
aacaacaaaggattatttcgaattgatccagtaacgggcaatatcaccttagaagagaag
ccagcacctactgacgtggggctgcaccgtcttgtggtcaacatcagtgacctggggtac
cctaaggctttgcacactcttgtgctggtatttctttacgtgaacgacactgctggaaac
acctcatatatatatgacctgatccgtaggactatggagaccccactggacaggaacata
ggtgacagtggtcaaccttatcagaacgaggactatctcaccatcatgattgccatcgtt
gccggggccatggtggtcatcgttgtgatcttcgtcacggtgctggtgcgctgtcgccat
gcatcgaggttcaaggccgctcagaggagcaaacaaggtgctgaatggatgtccccaaac
caggagaataaacaaaacaagaaaaagaaacggaagaaaagaaagtcgcccaagagttct
cttttgaactttgtgactatcgaagagtccaaacccgacgatgccgttcatgaacctatc
aatgggaccatcagcctgcctgttgagccggaggaacaaagcataggaagatttgactgg
ggcccagcccctccaacaaccttcaagcctaacagccctgacctggccaagcactacaaa
tctgcctctccacagcctgctttccatctcaaacctgacactccagtctcggtgaaaaag
caccatgtcattcaagagctccctttggacaacacctttgttgggggctgcgacaccctt
tccaaacgctcctccactagttcagatcacttcagtgcctcagagtgcagctcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacagcaaaaatgac
aatattcctgtcacacatcagaaatgccctggctctaccggtttccacattcgagagaat
gaagaaagtcattctgagtctcagcgccgtgttacctttcacctcccggatggctcccag
gaaagctgcagtgacagtggtctgggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctacgaccaggcctctccggac
aagaggaccgaagcagatggcaactcggaccccaattctgatggacctctgggtccgcga
gggttagctgaagctacagagatgtgcactcaagagtgcctggttttgggtcactctgat
aattgctggatgcctcctggcttgggtccgtaccaacatcctaaatctcctctgtcaacc
tttgcaccccagaaagaatggatcaagaaagacaagcttgtgaatgggcacaccctgaca
agagcgtggaaagaagacaccaacaggaaccagttcaatgaccggaagcagtatggctcc
aatgaaggccatttcaacaatggcagccacatggcagacattcctctggcaaatctgaag
tcctataagcaagcaggaggcacgattgagagtcctaaggagcaccaactctaa
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integrated database retrieval system
