Mastomys coucha (southern multimammate mouse): 116084995
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Entry
116084995 CDS
T07224
Symbol
Pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
116084995 (Pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcoc01009
]
116084995 (Pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcoc04515
]
116084995 (Pcdh20)
Protein phosphatases and associated proteins [BR:
mcoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116084995 (Pcdh20)
Cell adhesion molecules [BR:
mcoc04515
]
Cadherins
Protocadherins
116084995 (Pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
116084995
NCBI-ProteinID:
XP_031218229
LinkDB
All DBs
Position
Unknown
AA seq
952 aa
AA seq
DB search
MRGRGNARSSLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLPHVFLLFLFVGPFHCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQSQQLLHPEHTAAEGNPPLSFS
LASGGLSGQYVTLNNRSGELHTSAQEIDREALCLDRDGGAAWGGSTSIASSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVWVPENSPVNTRLAIEHPAVDPDV
GINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPP
LLGSATLTIGISDINDNCPLFVDSQINVTVYGNATVGTPVATVQAVDRDLGTNAQITYSY
SQKVPQESKDLFHLDEVTGVLKLSSKIGGSVQQTHKLTILANGPGCIPAVITALVSIIKV
VFRPPEIVPRYIANEVDGVVYLKELEPVNTPIAFFTIRDPEGKYKINCYLDGEGPFRLAP
YKPYNNEYLLETTKPMDYELQPFYEIAVVAWNSEGFHAKKIIKVQLLDDNDNAPVFLQPL
IELTIEENNAPNAFLTKLYATDADSGEMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDR
EEKEKYRYTVRAVDCGTPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVESMSCMPTLVALSVISLG
SITLVTGMGIYICLRKGKKHHREDDNLEVQIPLKRKIDLCTRERKPVDISNI
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggccgagggaacgcgcgcagctcgctggtccaggcagtgagcttgcgcccagcg
acctggcacccttgcctggatatggggcatctacatcgtcccagcagcaggaccagccac
aggaacctgccgcatgtttttctgcttttcctcttcgtgggacccttccattgcctcgcg
agttacagccgtgctaccgagcttctgtacagcttaaatgagggactgcccgcgggagtg
ctcataggcagcctggcagaggacctgaggctgctgcctcgagcctctgggagacagagc
cagcagttgctgcatccagagcacactgccgctgaggggaacccccctctctctttcagc
ttggcctctgggggactgagtggccagtatgtgaccctaaacaaccgctccggggagctg
cacacttctgcacaggagatcgacagagaagcattgtgcctggacagggatggaggggct
gcctggggcggcagtacctccattgcctcctctccttcttctgactcttgccttttgctt
ctggatgtgttggttctgcctcaggaatattttaggtttgtgaaggtgaaaattgccatc
agggatatcaatgacaatgctccgcagttccccatttctgaaatctcggtttgggtccca
gaaaattctcctgtaaatacccgattggcgatagagcatcctgctgtggatcctgatgta
ggcattaatggtgtgcaaacgtatcgcttactagactaccatggcatgtttaccctggac
gtggaggagaatgagaatggggagcgcacaccctacttgattgtcatgggtgctttggac
agagaaacccaggaccagtatgtgagcatcatcatagctgaggatggtgggtctccacca
ctgctgggcagtgccaccctcaccattggcataagtgacattaatgacaattgtcctctc
tttgtagactcacaaattaatgtcaccgtgtatggaaatgctacagtgggcaccccagta
gcaacagtccaggctgtggatagagacttggggacaaatgcacagatcacttatagttat
agccagaaagttccacaagaatccaaggatttattccatctggatgaagttactggagtc
cttaagctttccagtaagattggtgggagtgttcagcagacacataagctcaccatcctg
gctaatgggcctggctgtatccctgcagtgatcactgctcttgtgtcgatcatcaaagtc
gttttcagacccccagaaattgtcccacgttacatagcaaatgaggtggatggtgttgtg
tatcttaaagaactggagcctgttaatactccaattgcatttttcaccatcagagatcca
gaaggtaaatacaagattaactgctacttggatggtgaagggccattcaggctcgcaccc
tacaagccttacaacaatgaatatttgttggaaaccacaaaacctatggactatgagttg
cagcccttctatgaaatagctgtagtggcctggaactcagaggggtttcatgccaagaaa
atcattaaagtacaactcttagatgacaatgacaatgcccctgttttccttcaacccttg
atagaactgaccattgaagaaaacaatgcacccaatgcctttctgacgaagctctatgct
acagatgctgacagtggagagatgggccgtgtttcctacttcttgggacccgatgctcca
tcttatttttccttagacagtgtcactgggattctgacagtttctactcagctggacaga
gaagagaaagaaaagtacaggtacactgtccgagcagtggactgtgggacgccacccaga
gaatcagtggctacagtggccctcactgtgttggataaaaatgacaacagtccgaggttc
atcaacaaggacttcagcttttttgtgccagaaaattttccaggatatggcgaaattgga
gtcattagtgtaacagatgctgatgctgggaggaatggatgggtagccctctcggtaatg
aaccagagtgacattttcgtcatagatacaggcaagggtatgttgagagctaaagtctct
ttagacagagaacagcaaagttcttacactctgtgggtggaggctgtcgatgggggtgag
cctgctctttcctctaccacaaaaatcacaattcttcttctggacatcaatgataaccct
cctcttgttttatttcctcaatcaaacatgtcttatttgctggtcctaccttctactctc
cctggctcaccagtaacagaagtctatgcagttgacaaagatacaggcatgaatgctgtc
atagcttatagcatcatagggagaagaggtcccaggcctgagtccttcagaattgacccc
aagactggcaacatcactctggaggaagccttgctgcagacagattatgggttgcatcgc
ttactggtgaaagtgagtgatcacggataccccgaacctctccattccacagtcatggtg
aacttatttgtcaatgacactgtcagtaatgagagctacattgagagccttttgagaaag
gagccagaaattaatatagaagagaaagaaccacaaatctcaatagagccaactcatagg
aaggtagaatctatgtcctgtatgcccacattggtagctctgtctgtcataagcttgggt
tccatcacactagttacagggatgggaatatacatctgcttacggaaaggtaaaaagcat
cacagggaagacgataatttggaagtacagattccactgaaacgaaagatcgacttgtgt
acgagagagagaaaaccagtggatatttctaacatttga
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