Mastomys coucha (southern multimammate mouse): 116085035
Help
Entry
116085035 CDS
T07224
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04612
Antigen processing and presentation
mcoc05145
Toxoplasmosis
mcoc05152
Tuberculosis
mcoc05164
Influenza A
mcoc05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
116085035 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
116085035 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
116085035 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
116085035 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
116085035 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
mcoc01001
]
116085035 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mcoc04054
]
116085035 (Ciita)
Enzymes [BR:
mcoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116085035 (Ciita)
Protein kinases [BR:
mcoc01001
]
Serine/threonine kinases: Other
TAF1 family
116085035 (Ciita)
Pattern recognition receptors [BR:
mcoc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116085035 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_6
Motif
Other DBs
NCBI-GeneID:
116085035
NCBI-ProteinID:
XP_031218293
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MNHFQAILARVQTLLSSQKPRQVRALLDGLLEEELLSREYHCALLHEPDGDALARKISLT
LLEKGDLDLTFLSWVCSSLQAPTVERGTSYRDHGGHSLCATMDLGAPEGSYLELLNSDAD
PLHLYHLYEQMDLAGEEEIELSSEPDMDTINCDQFSKLLQDMEMDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQKPHKRRFPEEHAMDSKHRKLVP
TSRTSLNYLEFPAGHIQIFTTLPQGLWQISGAGTGAGTGLSSVLIYHGEMPQVNQVLPSS
SPTVPSLPQSPDRPGSTSPFAPSVADLPSMPEPALTSRVNETEDITSPSPCQEGSESSIE
LPKWPESVERFQHSLQDKYKALPESPSGPLVAMELVRARLERGSNKSQERELATPDWTER
QLAHGGLAEVLQVVGDCRRPRETQVIAVLGKAGQGKSHWARTVSYTWARGQLPQYDFVFY
VPCHCLDRPGDTYHLRDLLCPPSLQPLAMDDEVFDFIMRQPDRVLLILDAFEELEAQDGL
LYGPYGPLSPEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFS
TKQAQTYMKHYFENSGTAGNEDKALGLLEGQPFLFTHSHSPVLCSAACQLTKALLEQGTE
TQLPCTLTGLYVGLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQETQFSSVEVKTWAV
TQGLMQQTLGTTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNW
LECVPRFLAGLVFQPRAHCLGVLVEPAVAAVADRKRKVLTRYLKRLKLGTLRSGRLLELL
HCAHETQEPGIWEHVAHQLPGHLSFLGTRLTPPDVHMLGRALETASQDFFLDLRQTGIEP
SGLGNLVGLSCVTSFRASLSDTMALWESLQQQGEAQLLQAAEEKFTIEPFKAKSPKDVED
LDSLMQTQRLRNPSEDTAKDLPAIRDLKKLEFALGPVLGPQAFPTLAKILPAFSSLQHLD
LDSLSENKIGDKGVSKLSAIFPQLKALETLK
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccatcctggcccgggtacagaccctgctctccagccagaagccc
aggcaggtgcgggccctcctggacggcctgctggaagaagagctgctctcacgggaatac
cactgtgccctgctccatgagcctgatggtgatgctctggcccggaagatctccctgacc
ctgctggagaaaggggacttagacttgaccttcttgagctgggtctgcagtagtctgcag
gctcccacagtagagaggggcaccagctacagggaccatggaggtcatagtctgtgtgcc
accatggacctgggggctccagagggcagctacttggagctccttaacagcgatgccgac
cccctacacctctaccacctctatgagcagatggacctggctggggaggaggagatcgaa
ctcagctcagagccagacatggacaccatcaactgcgaccagttcagcaagctgttgcag
gacatggaaatggatgaagaaacccgggaggcctatgccaacatcgcggaactggatcag
tacgtgttccaggatacccagctggagggcctgagcaaggacctcttcatagagcacatt
ggagcagaggaaggctttggtgagaacatagagatccctgtagaagcaggacagaagcct
cacaagagacgcttcccagaagagcatgctatggactcaaagcacaggaagctagtgccc
acctctaggacctcactgaactatttggagttcccagctgggcacatccagatcttcacc
actctgccccagggactctggcaaatctcaggggctggcacaggggctggcacagggctc
tccagtgtcctaatctaccatggtgagatgccccaggtcaaccaagtactcccttcaagc
agccccactgtccccagtctcccccagtccccagaccggcctggctccaccagccccttc
gcaccatctgtagctgacttgcccagcatgcccgaacctgcgcttacctcccgtgtaaat
gagacagaggacataacatccccctccccatgccaagaaggttccgagtcttccatcgag
cttccaaaatggccagagtctgtggagcggttccagcactccctacaggacaagtacaag
gcattgcctgagagcccaagtggtcctctggtggccatggagctggtgcgggccaggttg
gaaagaggcagcaacaagagtcaggaaagggagctggccactcccgactggacagagcgc
cagctagcccatggtggtctggcggaggtacttcaggttgtaggtgactgcaggcgacca
cgagagacacaggtgatcgctgtgctgggcaaggctggccagggcaagagtcactgggcc
aggacagtgagttacacctgggcacgtggccagttgccacaatatgactttgtcttctat
gtcccctgtcattgcttggatcgtcctggggatacctaccatctgcgggatctgctctgt
cccccaagcctgcagccactggccatggatgacgaggtctttgatttcatcatgaggcag
ccggaccgtgttctgctcattctagatgcttttgaggagctagaggcccaagatggcctt
ctgtacggaccctatggacctctgtccccagaaccctgctccctccggggactgctggct
gggatcttccagcggaagctgctgcgaggctgcaccctgctccttacagcccggccccgg
ggccgcctggctcagagcctgagcaaggcagatgccatctttgaggtgcccagcttctct
actaagcaagcccagacttacatgaagcactactttgagaactcagggacagcagggaat
gaagacaaggccctgggcctcctggagggccaaccttttctcttcacccatagtcatagc
cctgttctgtgcagtgctgcgtgccagctcaccaaggccctgctggaacagggcacagag
acccagctaccttgtacacttacaggactctatgttggcctgctaggccctgcagctcag
aacagtcctcctggagccttagttgagctggctaagctggcatgggagctgggacgaagg
caccaaagcaccttgcaagaaacccagttttcctcagtggaggtgaaaacctgggcagtg
acccaaggcttgatgcagcagaccctggggaccacagaggctcaactggccttctccagt
tttctgctacaatgtttcctgggtgctgtgtggctggcacagtgcaatgaaatcaaagac
aaggagctgccacagtacctggccttgaccccgaggaagaagagaccctatgacaactgg
ctggaatgtgtgcctcgctttctggctggattggttttccagcctcgagcccactgcctg
ggagttctggtggagcctgcagtggctgcagtggcggacaggaaacggaaggttcttacc
aggtacctgaaacgcctgaagctggggacacttcggtcagggaggttgctggagctgcta
cactgtgcccacgaaacacaggaacctgggatttgggagcatgttgcacaccagctccct
gggcacctctccttcctgggcacccggctcacacccccagatgtgcacatgctgggcagg
gccttggagacagccagccaggacttcttcttagaccttcgtcagactggcattgagccc
tctggactgggaaacctcgtgggactcagctgtgtcaccagtttcagggcctccttgagt
gatacaatggcattatgggagtcccttcagcagcaaggagaagctcagctgctccaggca
gcagaggagaagttcaccattgaaccatttaaggccaaatccccaaaggatgtggaagac
ctggacagcctcatgcagacccagaggctgagaaacccctcagaggatacagctaaggat
cttcctgccatccgggaccttaagaagctagagtttgcgttgggccccgtcttgggcccc
caggctttccccacactggcaaagatccttccagccttctcttccctgcagcacctggac
ctggactcacttagtgagaacaagattggagacaagggtgtgtcgaagctctcagccatc
ttccctcagctgaaggccctggagacgctcaagtaa
DBGET
integrated database retrieval system
