Mastomys coucha (southern multimammate mouse): 116087040
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Entry
116087040 CDS
T07224
Name
(RefSeq) protocadherin beta-6-like
KO
K16494
protocadherin beta
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcoc04515
]
116087040
Cell adhesion molecules [BR:
mcoc04515
]
Cadherins
Protocadherins
116087040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
REJ
Motif
Other DBs
NCBI-GeneID:
116087040
NCBI-ProteinID:
XP_031221310
LinkDB
All DBs
Position
Unknown
AA seq
1527 aa
AA seq
DB search
METALAKTSQPRQVVFLTMLLFLWVSGSEAIKYSMPEETESGYLVANLAKDLGVRVGELA
ARGAQIHHRGNKDLLQLDVETGNLFLKEKLDREVLCGAAEPCVLYFQIILKNPVQFFQTE
LQLTDINDHSPEFLDTEMLLTIPESAQPGAMFPLKAAQDSDIGSNAVQNYTVSPNLHFHV
VTHSRSDGRKYPELVLDRALDREEQPELTLILTALDGGTPRRSGMTMVHIEIVDINDNAP
QFVQSLYEVQVPENIPLDALLVTVFARDLDAGIYGNIAYSVFQGDGDSQPFVIDEITGEI
RLSKKLDFEVTPFYTMEIAATDGGGLSGKCTVAVQVLDVNDHAPELTISTLSSPIPENSP
ESVVAVFGVFDPDSGDNGRMVCSIQNELPFLLKSTFENYYTLATERPLDRESKAEYNITI
TVSDMGTPRLTTQHTITVQVSDINDNAPVFTQTSYTLFVRENNSPGLHIGTISATDSDSG
SNAHITYSLLPPQDPRLALASLISINADNGQLFALRALDYETLQAFEFHVGVTDGGSPAL
SSQALVHLVVLDDNDNAPFVLYPMQNASAPCTELLPRAAEPGYLVTKVVAVDSDSGQNAW
LSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDVPKHRLLLLVKDNGDPPRSASVTLQVL
LVDGFSQPYLPLPEVALDPTRDEDNLTLYLVIALASVSSLFLLSVLLFVGVRLCRRARAA
SLGGCSVPEGHFPGHLVDVSGMGTLSQSYQYEVLMVPTRYSVLEESESGSFVAHLAKDLG
LGSGELAARSAWVVSDYDRQQLMLDPETGDLLLRERLDREELCGSVDPCVLPFQVFLERP
VQFFQGELLVQDINDNSPEFPDKELLLKIPENSQPGTLLPLNLAQDLDVGSNGLQQYTIS
PNSYFHVLTQNYSEGKKYPELVQDRALDREEQAELSLTLTALDGGSPQRSGTALVRILIM
DINDNAPEFVNSPYEVQILESSPPDSPILTVLARDADAGNFGRVSYGLLQASDEIQKTFS
INEVTGEIRLKKELDFEKIKSYRVEIEATDGGGLSGKGAVVIEVVDVNDNAPELTISSLT
SSVPENAPETVVAIILVRDRDSGENGKMICCISDHVPFILKSSYKNFYTLVTESPLDRES
RAEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPAFTQLSYTMFVRENNSPALHIGTI
SATDSDSGSNAHITYSLLPPQDPQLALASLVSINADNGQLFALRALDYEALQGFEFHVGA
KDGGSPALSSQALVRLVVLDDNDNSPFVLYPLQNTSAPCTELLPRAAEPGYLVTKVVAVD
RDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDALKHKLLLVVKDNGEPPRS
ASITLHVVLVDGFSQPYLPLPEVAHDPAQDDGDLLTLYLVIALASVSSLFLLSVLLFVGV
RLCRRVKATSLGSCSVPESHFPGHLVGVSETGTGTLSQSYQYEVCLTGDSGIGEFQFLKP
MVPNLMVQDPEREVKESPHCRDSFVFS
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atggagacagcactagcaaaaacgtcacagccaaggcaagttgtttttcttactatgctg
ttgtttttgtgggtgtctggttccgaggcaattaaatattccatgccagaagaaacagag
agtggctacttggtggcaaacctagcaaaagatctgggggtcagggttggggaactggca
gctagaggggcacaaatccatcacagaggaaacaaagacctcttacagctggatgtagag
acaggaaacctgttcttgaaggaaaaattagaccgtgaggtgttgtgcggggcggcagaa
ccctgtgtgctgtacttccagatcatactgaaaaaccctgtgcagttctttcaaactgaa
ctgcagctcacagatataaatgaccactctccagagttccttgacacggaaatgctccta
acaatccccgagagcgcccagccaggggccatgtttcctctgaaggcagcgcaggactct
gacatagggagcaacgctgttcagaactacacagtcagtcccaacctccatttccatgtc
gttactcacagtcgctcagatggcaggaaatacccagagctggtgctggacagagccctg
gacagggaggagcagcctgagctcactttaatcctcactgctctggatgggggtactcca
cgcaggtctgggatgacaatggttcatattgaaatcgtggacatcaacgataatgctccc
cagtttgttcaatctctctatgaggtgcaggttccagagaatatcccccttgatgcctta
cttgtcacagtctttgccagggatttagatgctggaatatatggaaatatagcctactct
gtgtttcaaggtgatggagactctcaaccatttgtaatagacgaaatcacaggagaaatc
cgtctaagcaaaaagttggattttgaggtaactccattctatactatggaaatcgcagcc
acggatggagggggcctttcaggaaaatgtactgtggctgtgcaggtgttggatgtgaat
gatcatgccccagagctgaccatctccacgctctcaagccctatccccgaaaactccccg
gagtctgtagttgctgtttttggtgtttttgacccggattctggggacaatggaaggatg
gtgtgctctattcagaacgaacttccatttcttttaaagtccacatttgagaattattat
actttagcaacagagaggccactggacagagagagcaaagctgaatacaacataaccatc
actgtctccgacatgggcacacccaggctcacaacccagcacactataacagtgcaggtg
tctgacatcaacgacaacgcccccgtcttcacccaaacctcctacaccctgtttgtccgc
gagaacaacagcccaggcctgcacataggcaccatcagtgccacagactcagactcaggc
tccaatgcccacatcacctactcgctgctgccgccccaggaccctcgactggccctcgct
tcgctcatctccatcaatgcagacaacgggcagctgttcgcactcagggctctggactat
gaaaccctgcaggccttcgagttccacgtgggcgtcacagacggaggctcacctgctctc
agcagccaggctctggtgcacttggtggtgctggacgacaatgacaatgcgcccttcgtg
ctctacccgatgcagaacgcctctgcaccctgcacagagctgctacctagggctgcggag
cctggctacctggtcaccaaggtggtggcagtggactctgactctggccagaacgcctgg
ctgtcattccagttgctcaaggccacggagccagggctgttcagcgtgtgggcgcacaat
ggcgaggtgcgcaccaccaggctgctgagcgagcgcgatgtgcccaagcacaggctgctg
ctgctggtcaaggacaatggtgatcctccgcgctctgccagtgttacactacaggtgctg
ctggtggatggcttctctcagccctacctacctcttcccgaggtggcgctggatcctaca
cgcgacgaagataatctcacgctgtatcttgtcatcgccttggcatctgtgtcttcgctc
ttcctcctgtctgtgctgctgtttgtgggggtgaggctgtgcaggagggccagggcggcc
tctctgggaggctgctctgtgcctgagggacactttcctggtcacctggtggacgtcagc
ggtatggggaccctgtcccagagctaccaatatgaggttctcatggtgcctactcggtac
tctgtcttggaggaatcagaaagtggctcctttgtagcccacctggccaaggatctgggc
ctgggatctggggagctggctgccaggtctgcatgggtggtgtctgactatgacagacag
cagttgatgctggatcctgagactggagatttgcttctgagggagagactagacagggaa
gaactgtgtggctctgtggatccctgtgtgctgcctttccaggtgttcctagaaagacca
gtgcagttttttcaaggagaattattggtccaggacataaatgacaactcaccagaattc
ccagataaagaattgctcttgaaaataccggaaaacagccagcctggtactctgttacca
ctgaatttagcccaggatttggatgtgggcagcaatgggcttcaacaatacacaatcagc
cccaactcttattttcatgtcctcactcaaaattatagcgagggcaagaaatacccagag
ttggtgcaggacagagccctggacagagaggagcaggcagagctgagccttaccctcact
gctctggatggtgggtctccacagaggtcaggaacagccctggttcgcatcctgatcatg
gacatcaatgacaatgctcctgagtttgtgaacagcccctatgaggtgcagatcctagag
agcagtcccccggactccccaatcctgactgtcttagcacgggatgcagatgctggcaac
tttgggagagtttcctatggcttgctccaagcatcagatgaaatccagaaaactttctca
ataaacgaagtcacaggagaaatacgactgaaaaaggaattggattttgaaaaaatcaaa
tcttatcgtgtagaaattgaggccacagatggaggagggctttctgggaagggcgccgtg
gtgatagaggtagtggatgtgaacgacaatgccccagagctgaccatatcttcactgacc
agctcagtcccagaaaatgctccagaaactgtggttgctatcatcctagtacgagataga
gattctggagagaatggaaaaatgatttgttgtatttcagatcacgtgccattcatttta
aaatcctcttacaagaacttttacactctggtgacagagagccctctggacagagagagc
agagctgagtacaacatcaccatcactgtctccgacctgggcacacccaggctcacaacc
cagcacaccataacagtgcaggtgtctgacatcaatgacaacgcccccgccttcacccag
ctctcttataccatgtttgtccgcgagaacaacagtcccgccctgcacattggcaccatc
agtgccacagactcagactcaggctccaatgctcacatcacctactcgctgctgccgccc
caggacccgcaactggccctcgcctcgctggtctctatcaacgctgacaacgggcagctg
ttcgcgctcagggcgctggactatgaggccctgcagggcttcgagtttcacgtgggcgcc
aaagacggaggctctcctgcgctcagcagccaggctctggtacgcttggtggtgctggac
gacaatgacaattcgcccttcgtgctctacccgctgcagaacacctcagcaccctgcacc
gaactactgcccagagcggcagagcccggatacctggtcaccaaggtggtggctgtggat
cgcgactctggccagaatgcctggctgtccttccagctgctcaaggccacggagccaggg
ctgttcagcgtgtgggctcacaatggcgaggtgcgcaccaccaggctgctgagcgagcga
gatgcgctcaagcacaagctgctgctggtggtcaaggacaatggtgagcctccacgctct
gccagcatcacactgcatgtggtgctcgtggatggcttctcccagccctatctgccactg
cctgaggtggctcacgaccctgcgcaggatgatggcgacttgctcacactgtacctggtc
attgccttggcctctgtgtcttctctctttttgttgtctgttctgctgttcgtgggggtg
agactatgtaggagggtgaaggcaacctctctgggtagctgctctgtgcctgagagtcac
tttcctggtcacctagtgggtgttagcgaaactggaactggcactctgtcccagagctac
cagtatgaggtgtgtctaacaggagactctgggattggtgagttccaattcctcaaaccc
atggtccccaacctaatggttcaggaccctgagagagaagtcaaggaaagtccgcactgc
agggatagctttgtatttagctaa
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integrated database retrieval system
