Mastomys coucha (southern multimammate mouse): 116087214
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Entry
116087214 CDS
T07224
Symbol
Synpo
Name
(RefSeq) synaptopodin isoform X1
KO
K21112
synaptopodin
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116087214 (Synpo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
116087214
NCBI-ProteinID:
XP_031221629
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MLGAHFPPPPLGPSEGRAAPCTFQIPDGSYRCLALEAEESSSEDGLQGEVRLVDLEEEGT
SQSRANHGTPPLSRAPAIIQPSSCGREARGGFQHSDKTSHDWDVVQARKVMTASASNSPM
PRVAQKPALGRSTSFTEKDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQRVNEFTL
ESRGQRSPKLNQEALQTGHPSSPIGHAPGHSVNPSSPSKSGSPKHTNPQNPSRGVPGHIM
EGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQSRETQHSTPNPPDTE
VPSPAADINQNPSSPNATLTTPASNSHHNQPTADVNQNPPATITPVPQNSSEAQCSPNGT
LDSKPSTPCADDGQPPVPAEEVRSSILLIDKVSAPSSAASTFSREATSLTSSGPPAADLM
SSSLLIDMQPSSPVAPAEQEVSGHAAVTTPTKVYSEVHLTLAKPASVVNRTARPFGMQLP
GTTSQIEQSPMMGRRHFGEKAWAPQASSMADRSPQPQRHIMSHSPMVERRLVGQRSPVVE
RRPLGHFTPPPTYAETLSTAPVASRVRSPPSYSTLYPSSDPKPSHLKGQVVPANKTGILE
ESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDHGEVGMEEEPFALGAEAS
NFQQEPIARDRASPSAAEETVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQ
SRMEKYVIESSGHAGHAELARCPSPTMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYH
GYLPENGVLRPEPTKQQPYQMRPSLYALSPVKEPAKASSRTTSSRTPSRTVSPRAASPAK
PSSLDLVPNLPRAGLPLSPALPRPSRSSPGLYTAPVQDSLQPTAVSPTYSSDISPVSPSR
AWSPRAKQAPRPSFSTRNAGIEAQDRPESLPTSPPWTPGASRPPSSLDGWVSPGPWELGR
GSSMSSPPPLPPPPPMSPSWSERSVSPLRSESEVRPPSRQLQALLARNIINAARRKSASP
RPAPAETLRPFSPPQGPPPPPPPVRMRSPQPARPAGNFRGATFSPIPKSPLPVGPSSCAS
PRSPQCVPGASRPFPYRRSPTDSDVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSL
PTEASCTT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgctcacttcccacccccgccccttggacccagtgagggaagggctgcccct
tgcaccttccagatccccgatgggagctacaggtgcctggctctggaagctgaggagagc
agcagtgaagacggcttgcagggagaggtgaggctggtggacctggaagaagaggggacc
agccaaagcagagccaaccatgggacaccaccgctatccagagccccagccataatccag
ccatccagctgtggcagggaggcacgaggtggtttccagcacagtgacaagacaagccat
gactgggatgtggtacaggcccggaaagtgatgacagccagtgccagcaacagccctatg
cccagggtggcccagaaaccagcactgggccggagcactagcttcactgagaaggatctg
aaggaggccaaggcaaggagccagcagattgcagcccagctgaccacgcctcccagctcc
aactcccggggggtccagctcttcaacaggcgcaggcagagggtaaacgagttcaccttg
gagagccgaggccagagatcaccaaagctcaaccaagaggccctccaaacggggcatcct
tcgagccccataggccatgccccagggcatagtgtgaatccttcgtctccatcaaagtcg
ggctctccaaagcacaccaacccccagaaccccagcagaggggtccctggccacatcatg
gagggatactcagaggaagccagtctgctgcggcacctggagaaggttgccagtgaggag
gaagaagtgcccttggtagtttacttaaaggagaatgcagccctgctgactgccaatggg
ctacacctgtcccagagccgagagacccagcactccacaccaaaccctcccgacactgaa
gtacccagtccagctgcagatatcaaccagaacccatcctcgcccaatgccacgctcacc
acaccagcctccaacagtcaccacaaccagcccacggctgatgtcaatcagaaccctcca
gccaccatcactcccgtcccacagaattcatccgaggcacagtgttccccgaacggcaca
cttgattccaaacccagcactccgtgtgcggatgatgggcagcccccggtgccagcagag
gaggtgagatccagcattctcctgattgacaaggtgtcggctccatcctctgccgccagc
accttctctagagaagccacttccctcaccagctctgggccacccgccgcagatctcatg
tccagctccctgctcattgacatgcagcccagctccccggtggcaccagcagaacaggag
gtgtctggacatgcagctgtcaccacgcccactaaagtgtacagtgaagtgcatctcact
ctagccaagcctgcatctgtggtcaacaggaccgccaggccttttgggatgcagttgcca
gggactaccagccagatagagcaaagccccatgatgggaagacgacattttggggagaag
gcctgggcaccccaggctagcagtatggcggataggagtccccagccacagaggcacata
atgtcccacagtcccatggtggaaaggaggctggttgggcagcgaagcccagtcgtagag
agacgccccttaggacacttcaccccaccccccacctatgcggagactttgtcaacagcc
cctgtggcttctcgggttaggtctcccccctcttactccactctgtaccccagctctgac
cccaagccttcccatttgaagggtcaggtagtccctgccaacaagacagggattttggaa
gaatctatggcccgtcgaggcagccggaaatccatgttcacttttgtggagaagcccaag
gtgactccgaatccagatttgctggacctagtgcagacagctgatgagaagcggaggcag
agagaccacggggaggtgggcatggaagaagagccctttgccctgggagctgaggcctcc
aacttccagcaggagccaatagctcgggacagggccagcccttcggcagctgaggagact
gtacccgagtgggcctcctgcctcaaatcaccccgtatccaggccaagccgaagcccaaa
cccaaccagaatctctcagaggcctcagggaagggggctgagctctatgcccgccgccag
tcacggatggagaagtacgttatagagtcttcaggccatgcaggccatgcagaattggcc
cgctgcccttcacctactatgtccctgccttcatcctggaagtacaccactaatgcccct
gggggcttccgagtggcatccttaagcccagcgcggactccgcctgcctctctctaccac
ggctatctgccagagaatggagtcctgcgccctgagcctaccaagcagcagccataccag
atgaggccttcgctctatgccctgtcgcctgtcaaggaacctgccaaagcctcatctcgc
accacctcctcacgcactccgtcacgcactgtctcacctcgtgctgcctccccggccaag
cctagttccctggacctggtgcccaacctgcccagagcaggcctcccactgtctcctgct
ctgcctcggccttcccgctcctccccaggcctctacactgccccagtccaggacagcctc
cagcccactgccgtgagccccacctacagcagtgatatctcccccgtgtctccctccagg
gcgtggtctcctcgagccaagcaggcccccaggccttccttctcaacccggaatgctggg
atcgaggcccaggaccgcccggagagcttgcccacgtccccgccctggacaccaggcgct
tcccggccccctagcagcctggacggctgggtaagcccggggccgtgggagctgggccgc
gggagcagcatgagcagccctccgccgctgccgccgcctccaccaatgtccccctcgtgg
agcgagcgctccgtgtccccgctgcgatcggagagcgaggtgcggcccccgagccgccag
ctgcaggcgcttctggcgcgcaacatcatcaacgcggcccggcgcaagagcgcctccccg
cggccagcgccggcagagaccctgcggcccttttccccgccgcaggggccgccgccaccg
ccgccgccggtgcgcatgcgctctccgcagccagcccgcccagcaggcaacttccgcgga
gccactttctctcccatcccgaagagcccgctgcccgtcgggccttcgtcctgcgctagt
ccccggagtcctcagtgcgtccccggtgcgtccaggccttttccctaccgccgatcaccc
acagactccgacgtgtctctcgactctgaggactctgggcttaagtcgcccggcatcctc
ggctacaacatctgtcctcggggctggaatggcagcctgaggctcaagcggggtagtctc
cccaccgaggcctcctgcaccacctaa
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